An update on the neurological short tandem repeat expansion disorders and the emergence of long-read sequencing diagnostics
SR Chintalaphani, SS Pineda, IW Deveson… - Acta Neuropathologica …, 2021 - Springer
… Short tandem repeat (STR) expansion disorders are an important cause of human neurological
disease… by other mutations such as missense and frameshift mutations. Interestingly, …
disease… by other mutations such as missense and frameshift mutations. Interestingly, …
Advancing genomic technologies and clinical awareness accelerates discovery of disease-associated tandem repeat sequences
T Gall-Duncan, N Sato, RKC Yuen… - Genome …, 2022 - genome.cshlp.org
… of new repeat disease motifs, the focus of … disease mutation discovery and our understanding
of pathogenic mechanisms. We begin with a brief overview of the history of repeat disease …
of pathogenic mechanisms. We begin with a brief overview of the history of repeat disease …
Tandem-genotypes: robust detection of tandem repeat expansions from long DNA reads
… In addition to short tandem repeat diseases, repeat copy … disease-causing mutations in
tandem repeat regions which have been overlooked by short read sequencing in human disease. …
tandem repeat regions which have been overlooked by short read sequencing in human disease. …
Genome-wide sequencing as a first-tier screening test for short tandem repeat expansions
IS Rajan-Babu, JJ Peng, R Chiu… - Genome medicine, 2021 - Springer
… , FXN, or DMPK disease STR locus, or the spinocerebellar ataxia disease STR panel, our …
We performed clinical PCR tests on seven (out of 10) full-mutation samples identified by our …
We performed clinical PCR tests on seven (out of 10) full-mutation samples identified by our …
[HTML][HTML] Accuracy of short tandem repeats genotyping tools in whole exome sequencing data
A Halman, A Oshlack - F1000Research, 2020 - ncbi.nlm.nih.gov
… Background: Short tandem repeats are an important source … , such as Huntington's disease
and spinocerebellar ataxias. … We compared four different short tandem repeats genotyping …
and spinocerebellar ataxias. … We compared four different short tandem repeats genotyping …
Short tandem repeat-enriched architectural RNAs in nuclear bodies: functions and associated diseases
K Ninomiya, T Hirose - Non-coding RNA, 2020 - mdpi.com
… UGGAA repeat RNA suppresses the toxic effects of the ALS-causing TDP43 mutation. This
… the TDP43 mutation could be responsible for the neurodegenerative disease phenotypes [39]…
… the TDP43 mutation could be responsible for the neurodegenerative disease phenotypes [39]…
Patterns of de novo tandem repeat mutations and their role in autism
… 3d), we find that the mutation excess in probands increases for mutations resulting in rarer
… resource for further characterizing TR mutations and their role in ASD and other diseases. …
… resource for further characterizing TR mutations and their role in ASD and other diseases. …
Properties of structural variants and short tandem repeats associated with gene expression and complex traits
… Structural variants (SVs) and short tandem repeats (STRs) … of structural variant classes and
short tandem repeats that are … Traits linked to eSVs and eSTRs included diseases such as …
short tandem repeats that are … Traits linked to eSVs and eSTRs included diseases such as …
Forensic autosomal short tandem repeats and their potential association with phenotype
… Forensic DNA profiling utilizes autosomal short tandem … directly causing or predicting
disease. Such a demonstration … causative or predictive of disease. Regardless, the likelihood of …
disease. Such a demonstration … causative or predictive of disease. Regardless, the likelihood of …
Genome-wide detection of tandem DNA repeats that are expanded in autism
B Trost, W Engchuan, CM Nguyen… - Nature, 2020 - nature.com
… tandem repeats (n = 31,793 tandem repeat loci); blue bars represent known simple sequence
repeats (n = 1,031,708 known short tandem … to known disease-causing tandem repeat loci, …
repeats (n = 1,031,708 known short tandem … to known disease-causing tandem repeat loci, …