The pattern of DNA methylation alteration, and its association with the expression changes of non-coding RNAs and mRNAs in Moso bamboo under abiotic stress

Y Ding, LH Zou, J Wu, M Ramakrishnan, Y Gao, L Zhao… - Plant Science, 2022 - Elsevier
… explored, particularly in the area of plant hormone signaling. … stress-induced DNA methylation
alteration and non-coding RNAs … ) was used to generate DNA methylome profiles of Moso …

[HTML][HTML] Continuous salt stress-induced long non-coding RNAs and DNA methylation patterns in soybean roots

R Chen, M Li, H Zhang, L Duan, X Sun, Q Jiang… - BMC genomics, 2019 - Springer
… Meanwhile, the absence of conserved lncRNA candidates among plant species reflected …
be distinct from other regulatory non-coding RNAs, such as miRNAs. DNA methylation levels of …

[HTML][HTML] Classification and experimental identification of plant long non-coding RNAs

MI Rai, M Alam, DA Lightfoot, P Gurha, AJ Afzal - Genomics, 2019 - Elsevier
Plants have evolved two additional non-redundant polymerases (Pol IV and V) that … by RNA
mediated DNA methylation (RdDM) [38]. The plant specific multi-subunit RNA Polymerase IV …

DNA and coding/noncoding RNA methylation analysis provide insights into tomato fruit ripening

S Guo, Y Zheng, D Meng, X Zhao, Z Sang… - The Plant …, 2022 - Wiley Online Library
… Targets of long non-coding RNAs and circular RNAs with different m5C sites were also …
ethylene emission is affected by DNA methylation (5mC), we examined the changes in DNA

When junk DNA turns functional: transposon-derived non-coding RNAs in plants

FD Ariel, PA Manavella - Journal of experimental botany, 2021 - academic.oup.com
… maintains DNA methylation by the production of RNAPIV-/RDR2-/DCL3-dependent 24 nt
het-siRNAs. Het-siRNA can be loaded into AGO4, AGO6, or AGO3 to trigger DNA methylation

[HTML][HTML] Long non-coding RNA in plants in the era of reference sequences

H Budak, SB Kaya, HB Cagirici - Frontiers in Plant Science, 2020 - frontiersin.org
… players driving RNA-mediated DNA methylation (RdDM). … , plant lncRNAs with known
functions are classified as long intergenic non-coding RNAs (lincRNAs), intronic non-coding RNAs

[HTML][HTML] Research progress on plant long non-coding RNA

L Wu, S Liu, H Qi, H Cai, M Xu - Plants, 2020 - mdpi.com
… In addition, the transcription, splicing patterns, and secondary structure of lncRNAs are also
regulated by RNA modification, DNA methylation, and histone modification [8,9]. For miRNAs…

Non-coding RNAs and transposable elements in plant genomes: emergence, regulatory mechanisms and roles in plant development and stress responses

J Hou, D Lu, AS Mason, B Li, M Xiao, S An, D Fu - Planta, 2019 - Springer
… Second, Pol IV and Pol V-dependent lncRNAs induce RNA-directed DNA methylation to
decrease the expression level of a target gene (Fig. 3a) (Kim and Sung 2012). Third, lncRNAs …

[HTML][HTML] Long non-coding RNAs in plants: emerging modulators of gene activity in development and stress responses

L Chen, QH Zhu, K Kaufmann - Planta, 2020 - Springer
… layer of regulation of the gene by a non-coding RNA. ncW6 derives from a transposon of the
… to trigger DNA methylation in the flanking regions of HaWRKY6. DNA methylation changes …

Relationships between genome methylation, levels of noncoding RNAs, mRNAs and metabolites in ripening tomato fruit

J Zuo, D Grierson, LT Courtney, Y Wang… - The Plant …, 2020 - Wiley Online Library
non-coding RNAs and DNA methylation could influence mRNA concentrations related to
ethylene responses, carotenoid synthesis and other ripening events during the transformation …