… be used for assignments of bacterial strains to populations. … recombination, and large-scale
gene insertions and deletions. … Pangenome pipelines must be efficient in order to handle the …

… recombination with DNA from unrelated strains, the insertion by … of modern, large-scale
comparative genomics. Roary (Page et … Comparative analysis of Salmonella genomes identifies a …

… either occupy isolated ecological niches or lack efficient mechanisms for gene exchange and
… report on a large-scale genome-wide evolutionary study involving 22 D. solani strains. In …

… Finally, there is a lack of efficient strain typing methods that … emerged as a powerful tool for
bacterial strain classification and … The pipeline’s first step relies on the eCAMBer software [41], …

… , an effective tool for international strain comparison is still lacking. … strain (RefSeq accession
number GCF_000007645) as a reference. The pipeline’s first step relies on the eCAMBer …

… power of cgMLST by comparing this proposed standard to … The pipeline’s next step relies
on eCAMBer (35), which … To conduct the research, we used bacterial strains, which are not …

… For most studies in comparative genomics starting with NGS … that multiple strains must be
sequenced to study a bacterial … for the design of effective drugs or universal vaccines. To date, …

… CAMBer can identify multigene families and mutations in a variety of bacterial strains but
does not provide evolutionary analysis … of many species is not yet resolved and large-scale …

… An analogous analysis performed on five strains of … whole genomes allowing the large-scale
genomes sequencing projects for … The examination of crop pan-genomes aims at effectively …

… outcomes must be proven in large-scale trials to lead to the … -resistant strain group, contrary
to the sensitive strain group that … dose administrated in the nebulized camber was 7 MIU, and …