Estimating genome-wide DNA methylation heterogeneity with methylation patterns

PY Lin, YT Chang, YC Huang, PY Chen - Epigenetics & Chromatin, 2023 - Springer
… To illustrate our method, we considered five DNA methylation patterns as 5 nodes in the
phylogenetic tree (Additional file 1: Fig. S10). The tree could be constructed given \({C}_{2}^{5}\) …

Seasonal variation in genome-wide DNA methylation patterns and the onset of seasonal timing of reproduction in great tits

HM Viitaniemi, I Verhagen, ME Visser… - Genome Biology and …, 2019 - academic.oup.com
… to test if, as suggested by other studies, DNA methylationgenome-wide temporal variation
in DNA methylation and 2) whether temperature affects temporal changes in DNA methylation

[HTML][HTML] Genome-wide DNA methylation patterns associated with general psychopathology in children

J Rijlaarsdam, ED Barker, C Caserini… - Journal of psychiatric …, 2021 - Elsevier
… This study identified genome-wide DNAm patterns that associated to the general factor of …
In summary, the current study identified genome-wide DNAm patterns that associated to GPF …

Widespread conservation and lineage-specific diversification of genome-wide DNA methylation patterns across arthropods

SH Lewis, L Ross, SA Bain, E Pahita, SA Smith… - PLoS …, 2020 - journals.plos.org
… of arthropod methylation patterns by characterising genome-wide CpG methylation across …
we reconstructed the trajectory of DNA methylation patterns across the phylum. Our data show …

Efficient and accurate determination of genome-wide DNA methylation patterns in Arabidopsis thaliana with enzymatic methyl sequencing

S Feng, Z Zhong, M Wang, SE Jacobsen - Epigenetics & chromatin, 2020 - Springer
… -directed DNA methylation (RdDM) [29], we looked at methylation in … -studied methylation
pattern, we looked at methylation in the … While methylated cytosines in non-CG contexts were …

Genome-wide DNA methylation patterns in persistent attention-deficit/hyperactivity disorder and in association with impulsive and callous traits

M Meijer, M Klein, E Hannon, D Van der Meer… - Frontiers in …, 2020 - frontiersin.org
… robustness of our DNA methylation signal, we aimed to validate reported age by measuring
DNA methylation age. The average chronological age predicted from methylation data was …

Longitudinal genome-wide DNA methylation analysis uncovers persistent early-life DNA methylation changes

RF Pérez, P Santamarina, JR Tejedor… - Journal of translational …, 2019 - Springer
Methylation 450K BeadChip which mainly interrogates CpG-dense genomic regions, even
though the functional association between DNA methylationgenome-wide DNA methylation

Genome-wide DNA methylation profiles reveal common epigenetic patterns of interferon-related genes in multiple autoimmune diseases

S Chen, W Pu, S Guo, L Jin, D He, J Wang - Frontiers in genetics, 2019 - frontiersin.org
… performed genome-wide DNA methylation analysis of the patients and controls in both CD4+
and CD8+ T cell subsets. After stringent quality control and differential methylation analysis…

Genome-wide DNA methylation in suicide victims revealing impact on gene expression

K Kouter, T Zupanc, AV Paska - Journal of affective disorders, 2019 - Elsevier
… This genome-wide methylation study, conducted on subjects in Slovenia revealed many …
Our results may offer novel insights into altered methylation pattern in suicide victims. Additional …

Diagnostic utility of genome-wide DNA methylation testing in genetically unsolved individuals with suspected hereditary conditions

E Aref-Eshghi, EG Bend, S Colaiacovo… - The American Journal of …, 2019 - cell.com
… In the present study, using genome-wide DNA methylation analysis, we develop a computational
model for the concurrent identification of 14 ND/CA syndromes currently known to be …