miARma-Seq, a comprehensive pipeline for the simultaneous study and integration of miRNA and mRNA expression data
E Andrés-León, AM Rojas - Methods, 2019 - Elsevier
… suite designed to identify and quantify mRNAs, miRNAs and circRNAs, determining their …
In summary, miARma-Seq performs all the steps necessary for miRNA and mRNA analysis, …
In summary, miARma-Seq performs all the steps necessary for miRNA and mRNA analysis, …
A benchmarking of pipelines for detecting ncRNAs from RNA-Seq data
S Di Bella, A La Ferlita, G Carapezza… - Briefings in …, 2020 - academic.oup.com
… iSmaRT enables a comprehensive analysis, … miARma-Seq is a pipeline enabling the
identification and differential expression analysis of mRNAs, miRNAs, snoRNAs and circRNAs. It …
identification and differential expression analysis of mRNAs, miRNAs, snoRNAs and circRNAs. It …
DIANA-mAP: analyzing miRNA from raw NGS data to quantification
… RNA molecules [6], providing new insights concerning the function of crucial regulators. Due
to miRNAs’ short length, thorough … miARma-Seq [15], currently the only miRNA analysis tool…
to miRNAs’ short length, thorough … miARma-Seq [15], currently the only miRNA analysis tool…
[PDF][PDF] User-friendly software for coding and non-coding RNA-Seq data analysis: from raw sequencing data to biological pathway analysis
… For pathway analysis we mean an extensive class … miARma-Seq is a pipeline enabling the
identification and differential expression analysis of mRNAs, miRNAs, snoRNAs and circRNAs…
identification and differential expression analysis of mRNAs, miRNAs, snoRNAs and circRNAs…
[PDF][PDF] DIANA-mAP: Analyzing miRNA from Raw NGS Data to Quantification. Genes 2021, 12, 46
A Alexiou, D Zisis, I Kavakiotis, M Miliotis… - 2020 - researchgate.net
… and comprehensive look at the effects of that analysis step in … with miARma-Seq [15], currently
the only miRNA analysis tool… of the known small RNA types including miRNA, rRNA, tRNA …
the only miRNA analysis tool… of the known small RNA types including miRNA, rRNA, tRNA …
Towards a Flexible and Portable Workflow for Analyzing MiRNA-Seq Neuropsychiatric Data: An Initial Replicability Assessment
D Pérez-Rodríguez, M Pérez-Rodríguez… - … Conference on Practical …, 2022 - Springer
… MiRNAs are short non-coding RNA molecules that participate in the regulation … analysis
(DEA) results. We found that only 28% of the original results were replicated with miARma-Seq …
(DEA) results. We found that only 28% of the original results were replicated with miARma-Seq …
On the reproducibility of MiRNA-Seq differential expression analyses in neuropsychiatric diseases
D Pérez-Rodríguez, H López-Fernández… - Practical Applications of …, 2022 - Springer
… Our objective is to compare the DE miRNAs obtained through miARma-Seq with those
reported by the original studies. To do this, an attempt has been made to copy the criteria and …
reported by the original studies. To do this, an attempt has been made to copy the criteria and …
Disease‐Associated Circular RNAs: From Biology to Computational Identification
… 30 recent bioinformatic analysis tools that are publicly available for circRNA study. …
miARma-seq 2016 A comprehensive tool for the identification of miRNAs, mRNAs, and circRNAs …
miARma-seq 2016 A comprehensive tool for the identification of miRNAs, mRNAs, and circRNAs …
High throughput sequencing of microRNA in rainbow trout plasma, mucus, and surrounding water following acute stress
… Following small RNA-Seq and pathway analysis, we … those included within the miARma-Seq
tool, so this analysis was also … Complete stats and log files from the alignment, annotation, …
tool, so this analysis was also … Complete stats and log files from the alignment, annotation, …
A miRNA-and mRNA-seq-based feature selection approach for kidney cancer biomakers
S Kim - Cancer Informatics, 2020 - journals.sagepub.com
… generated, with an advantage of less noise in computational analysis. In this study, we
analyzed the kidney miRNA and mRNA sequence data sets for predicting cancer markers using 5 …
analyzed the kidney miRNA and mRNA sequence data sets for predicting cancer markers using 5 …