Review of databases for experimentally validated human microRNA–mRNA interactions
… databases with experimentally validated targets, human data, … databases that curate
experimentally validated data on … Similarly, databases such as miRGator, miRSystem, miRGate …
experimentally validated data on … Similarly, databases such as miRGator, miRSystem, miRGate …
Computational resources for analysis of miRNA targetome
… tools and databases developed for the miRNA target. It … curated 3576 miRNA target interactions
between 2297 target genes and 657 miRNAs for 17 species including humans, mice, rats…
between 2297 target genes and 657 miRNAs for 17 species including humans, mice, rats…
MiRNAs: biology, biogenesis, their web-based tools, and databases
M Tafrihi, E Hasheminasab - Microrna, 2019 - ingentaconnect.com
… miRNA component of the RISC complex binds to the complementary sequence of mRNA
target … different classes including databases for viral miRNAs, and plant miRNAs, miRNAs in …
target … different classes including databases for viral miRNAs, and plant miRNAs, miRNAs in …
Computational resources for prediction and analysis of functional miRNA and their targetome
… miRGate is a manually curated database to examine miRNA and gene targets along with
isoforms from 3′ UTRs of human, mouse, and rat [66]. TargetScanS provides …
isoforms from 3′ UTRs of human, mouse, and rat [66]. TargetScanS provides …
Computational methods and software tools for functional analysis of miRNA data
A Garcia-Moreno, P Carmona-Saez - Biomolecules, 2020 - mdpi.com
… curated annotations. In this review, we describe the two workflows of miRNAs enrichment
analysis, based on target … in 500 mature miRNAs from human, mouse, and rat being associated …
analysis, based on target … in 500 mature miRNAs from human, mouse, and rat being associated …
[HTML][HTML] Integrative approaches for analysis of mRNA and microRNA high-throughput data
PV Nazarov, S Kreis - Computational and Structural Biotechnology Journal, 2021 - Elsevier
… It is based on manual curation of around 11 k publications … of predicted targets are available
for human, mouse, rat dog … for human miRNAs, only ~10% of the recorded miRNA targets …
for human, mouse, rat dog … for human miRNAs, only ~10% of the recorded miRNA targets …
Comprehensive overview and assessment of microRNA target prediction tools in Homo sapiens and Drosophila melanogaster
… high confidence human miRNAs, out of which 208 miRNAs were selected … The validated
target genes of all mature miRNAs were … miRGate: a curated database of human, mouse and rat …
target genes of all mature miRNAs were … miRGate: a curated database of human, mouse and rat …
miARma-Seq, a comprehensive pipeline for the simultaneous study and integration of miRNA and mRNA expression data
E Andrés-León, AM Rojas - Methods, 2019 - Elsevier
… To estimate all the possible targets in human, mouse or rat … As a final result, we obtain a
curated dataset that contains … miRNA-mRNA interactions stored in the miRGate database. All the …
curated dataset that contains … miRNA-mRNA interactions stored in the miRGate database. All the …
Turning data to knowledge: Online tools, databases, and resources in microRNA research
I Blass, K Zohar, M Linial - Systems Biology of MicroRNAs in Cancer, 2022 - Springer
… targets, other miRNAs can pair with 100s of different mRNAs. Moreover, among the ~2600
reported human miRNAs… with supporting evidence from 7.2 k manually curated publications. A …
reported human miRNAs… with supporting evidence from 7.2 k manually curated publications. A …
miRNA, siRNA, and lncRNA: Recent Development of Bioinformatics Tools and Databases in Support of Combating Different Diseases
C Chakraborty, M Bhattacharya… - Current …, 2024 - ingentaconnect.com
… profiles database. It is used for the coexpression analysis of miRNA and target mRNAs,
which is based on miRNA-seq and … miRGate: a curated database of human, mouse and rat …
which is based on miRNA-seq and … miRGate: a curated database of human, mouse and rat …