Review of databases for experimentally validated human microRNAmRNA interactions

D Kariuki, K Asam, BE Aouizerat, KA Lewis… - Database, 2023 - academic.oup.com
databases with experimentally validated targets, human data, … databases that curate
experimentally validated data on … Similarly, databases such as miRGator, miRSystem, miRGate

Computational resources for analysis of miRNA targetome

A Thakur, S Kamboj, M Kumar - MicroRNA in Human Malignancies, 2022 - Elsevier
… tools and databases developed for the miRNA target. It … curated 3576 miRNA target interactions
between 2297 target genes and 657 miRNAs for 17 species including humans, mice, rats

MiRNAs: biology, biogenesis, their web-based tools, and databases

M Tafrihi, E Hasheminasab - Microrna, 2019 - ingentaconnect.com
miRNA component of the RISC complex binds to the complementary sequence of mRNA
target … different classes including databases for viral miRNAs, and plant miRNAs, miRNAs in …

Computational resources for prediction and analysis of functional miRNA and their targetome

I Monga, M Kumar - … Biology of Non-Coding RNA: Methods and Protocols, 2019 - Springer
miRGate is a manually curated database to examine miRNA and gene targets along with
isoforms from 3′ UTRs of human, mouse, and rat [66]. TargetScanS provides …

Computational methods and software tools for functional analysis of miRNA data

A Garcia-Moreno, P Carmona-Saez - Biomolecules, 2020 - mdpi.com
curated annotations. In this review, we describe the two workflows of miRNAs enrichment
analysis, based on target … in 500 mature miRNAs from human, mouse, and rat being associated …

[HTML][HTML] Integrative approaches for analysis of mRNA and microRNA high-throughput data

PV Nazarov, S Kreis - Computational and Structural Biotechnology Journal, 2021 - Elsevier
… It is based on manual curation of around 11 k publications … of predicted targets are available
for human, mouse, rat dog … for human miRNAs, only ~10% of the recorded miRNA targets

Comprehensive overview and assessment of microRNA target prediction tools in Homo sapiens and Drosophila melanogaster

M Faiza, K Tanveer, S Fatihi, Y Wang… - Current …, 2019 - ingentaconnect.com
… high confidence human miRNAs, out of which 208 miRNAs were selected … The validated
target genes of all mature miRNAs were … miRGate: a curated database of human, mouse and rat

miARma-Seq, a comprehensive pipeline for the simultaneous study and integration of miRNA and mRNA expression data

E Andrés-León, AM Rojas - Methods, 2019 - Elsevier
… To estimate all the possible targets in human, mouse or rat … As a final result, we obtain a
curated dataset that contains … miRNA-mRNA interactions stored in the miRGate database. All the …

Turning data to knowledge: Online tools, databases, and resources in microRNA research

I Blass, K Zohar, M Linial - Systems Biology of MicroRNAs in Cancer, 2022 - Springer
targets, other miRNAs can pair with 100s of different mRNAs. Moreover, among the ~2600
reported human miRNAs… with supporting evidence from 7.2 k manually curated publications. A …

miRNA, siRNA, and lncRNA: Recent Development of Bioinformatics Tools and Databases in Support of Combating Different Diseases

C Chakraborty, M Bhattacharya… - Current …, 2024 - ingentaconnect.com
… profiles database. It is used for the coexpression analysis of miRNA and target mRNAs,
which is based on miRNA-seq and … miRGate: a curated database of human, mouse and rat