Computational Analysis of Thermodynamic Factors for Intrinsically Disordered Ligand Recognition

J Shi - 2021 - oaktrust.library.tamu.edu
The nonstructural protein 1 (NS1) of the 1918 Spanish influenza A virus hijacks N-terminal
Src-homology 3 (nSH3) domain of host's cellular CrkII with exceptionally high affinity through …

[PDF][PDF] Entropy hotspots for the binding of intrinsically disordered ligands to a receptor domain

J Shi, Q Shen, JH Cho, W Hwang - Biophysical journal, 2020 - cell.com
Proline-rich motifs (PRMs) are widely used for mediating protein-protein interactions with
weak binding affinities. Because they are intrinsically disordered when unbound …

[PDF][PDF] Molecular mechanisms of tight binding through fuzzy interactions

Q Shen, J Shi, D Zeng, B Zhao, P Li, W Hwang… - Biophysical …, 2018 - cell.com
Many intrinsically disordered proteins (IDPs) form fuzzy complexes upon binding to their
targets. Although many IDPs are weakly bound in fuzzy complexes, some IDPs form high …

[HTML][HTML] Conformational entropy in molecular recognition of intrinsically disordered proteins

K Skriver, FF Theisen, BB Kragelund - Current Opinion in Structural Biology, 2023 - Elsevier
Broad conformational ensembles make intrinsically disordered proteins or regions
entropically intriguing. Although methodologically challenging and understudied, emerging …

A free-energy landscape for coupled folding and binding of an intrinsically disordered protein in explicit solvent from detailed all-atom computations

J Higo, Y Nishimura, H Nakamura - Journal of the American …, 2011 - ACS Publications
The N-terminal repressor domain of neural restrictive silencer factor (NRSF) is an
intrinsically disordered protein (IDP) that binds to the paired amphipathic helix (PAH) …

Multiscaled exploration of coupled folding and binding of an intrinsically disordered molecular recognition element in measles virus nucleoprotein

Y Wang, X Chu, S Longhi, P Roche… - Proceedings of the …, 2013 - National Acad Sciences
Numerous relatively short regions within intrinsically disordered proteins (IDPs) serve as
molecular recognition elements (MoREs). They fold into ordered structures upon binding to …

Fuzzy regions in an intrinsically disordered protein impair protein–protein interactions

A Gruet, M Dosnon, D Blocquel, J Brunel… - The FEBS …, 2016 - Wiley Online Library
Despite the partial disorder‐to‐order transition that intrinsically disordered proteins often
undergo upon binding to their partners, a considerable amount of residual disorder may be …

Structural biology, ASB/ABA meeting, Melbourne

MA Sani, T Nishizaka - Biophysical Reviews, 2019 - Springer
Structural biology plays a pivotal role in understanding complex molecular assemblies that
encode vital functions in cellular processes. The determination of the nucleic acids, protein …

[HTML][HTML] A new tool to study the binding behavior of intrinsically disordered proteins

A Upadhyay, C Ekenna - International Journal of Molecular Sciences, 2023 - mdpi.com
Understanding the binding behavior and conformational dynamics of intrinsically disordered
proteins (IDPs) is crucial for unraveling their regulatory roles in biological processes …

Molecular basis for structural heterogeneity of an intrinsically disordered protein bound to a partner by combined ESI-IM-MS and modeling

A D'Urzo, A Konijnenberg, G Rossetti… - Journal of The …, 2014 - ACS Publications
Intrinsically disordered proteins (IDPs) form biologically active complexes that can retain a
high degree of conformational disorder, escaping structural characterization by conventional …