Computational Analysis of Thermodynamic Factors for Intrinsically Disordered Ligand Recognition
J Shi - 2021 - oaktrust.library.tamu.edu
The nonstructural protein 1 (NS1) of the 1918 Spanish influenza A virus hijacks N-terminal
Src-homology 3 (nSH3) domain of host's cellular CrkII with exceptionally high affinity through …
Src-homology 3 (nSH3) domain of host's cellular CrkII with exceptionally high affinity through …
[PDF][PDF] Entropy hotspots for the binding of intrinsically disordered ligands to a receptor domain
Proline-rich motifs (PRMs) are widely used for mediating protein-protein interactions with
weak binding affinities. Because they are intrinsically disordered when unbound …
weak binding affinities. Because they are intrinsically disordered when unbound …
[PDF][PDF] Molecular mechanisms of tight binding through fuzzy interactions
Many intrinsically disordered proteins (IDPs) form fuzzy complexes upon binding to their
targets. Although many IDPs are weakly bound in fuzzy complexes, some IDPs form high …
targets. Although many IDPs are weakly bound in fuzzy complexes, some IDPs form high …
[HTML][HTML] Conformational entropy in molecular recognition of intrinsically disordered proteins
Broad conformational ensembles make intrinsically disordered proteins or regions
entropically intriguing. Although methodologically challenging and understudied, emerging …
entropically intriguing. Although methodologically challenging and understudied, emerging …
A free-energy landscape for coupled folding and binding of an intrinsically disordered protein in explicit solvent from detailed all-atom computations
J Higo, Y Nishimura, H Nakamura - Journal of the American …, 2011 - ACS Publications
The N-terminal repressor domain of neural restrictive silencer factor (NRSF) is an
intrinsically disordered protein (IDP) that binds to the paired amphipathic helix (PAH) …
intrinsically disordered protein (IDP) that binds to the paired amphipathic helix (PAH) …
Multiscaled exploration of coupled folding and binding of an intrinsically disordered molecular recognition element in measles virus nucleoprotein
Numerous relatively short regions within intrinsically disordered proteins (IDPs) serve as
molecular recognition elements (MoREs). They fold into ordered structures upon binding to …
molecular recognition elements (MoREs). They fold into ordered structures upon binding to …
Fuzzy regions in an intrinsically disordered protein impair protein–protein interactions
A Gruet, M Dosnon, D Blocquel, J Brunel… - The FEBS …, 2016 - Wiley Online Library
Despite the partial disorder‐to‐order transition that intrinsically disordered proteins often
undergo upon binding to their partners, a considerable amount of residual disorder may be …
undergo upon binding to their partners, a considerable amount of residual disorder may be …
Structural biology, ASB/ABA meeting, Melbourne
MA Sani, T Nishizaka - Biophysical Reviews, 2019 - Springer
Structural biology plays a pivotal role in understanding complex molecular assemblies that
encode vital functions in cellular processes. The determination of the nucleic acids, protein …
encode vital functions in cellular processes. The determination of the nucleic acids, protein …
[HTML][HTML] A new tool to study the binding behavior of intrinsically disordered proteins
A Upadhyay, C Ekenna - International Journal of Molecular Sciences, 2023 - mdpi.com
Understanding the binding behavior and conformational dynamics of intrinsically disordered
proteins (IDPs) is crucial for unraveling their regulatory roles in biological processes …
proteins (IDPs) is crucial for unraveling their regulatory roles in biological processes …
Molecular basis for structural heterogeneity of an intrinsically disordered protein bound to a partner by combined ESI-IM-MS and modeling
A D'Urzo, A Konijnenberg, G Rossetti… - Journal of The …, 2014 - ACS Publications
Intrinsically disordered proteins (IDPs) form biologically active complexes that can retain a
high degree of conformational disorder, escaping structural characterization by conventional …
high degree of conformational disorder, escaping structural characterization by conventional …