Folding-upon-binding pathways of an intrinsically disordered protein from a deep Markov state model
TR Sisk, P Robustelli - … of the National Academy of Sciences, 2024 - National Acad Sciences
A central challenge in the study of intrinsically disordered proteins is the characterization of
the mechanisms by which they bind their physiological interaction partners. Here, we utilize …
the mechanisms by which they bind their physiological interaction partners. Here, we utilize …
Thermodynamic contribution of backbone conformational entropy in the binding between SH3 domain and proline-rich motif
Biological functions of intrinsically disordered proteins (IDPs), and proteins containing
intrinsically disordered regions (IDRs) are often mediated by short linear motifs, like proline …
intrinsically disordered regions (IDRs) are often mediated by short linear motifs, like proline …
Ensemble-based thermodynamics of the fuzzy binding between intrinsically disordered proteins and small-molecule ligands
In contrast to the “lock-and-key” model underlying the long-term success of structural biology
and rational drug design, intrinsically disordered proteins (IDPs) exist in an ensemble of …
and rational drug design, intrinsically disordered proteins (IDPs) exist in an ensemble of …
[PDF][PDF] Energetics of a protein disorder–order transition in small molecule recognition
Many proteins recognise other proteins via mechanisms that involve the folding of
intrinsically disordered regions upon complex formation. Here we investigate how the …
intrinsically disordered regions upon complex formation. Here we investigate how the …
Conserved molecular recognition by an intrinsically disordered region in the absence of sequence conservation
Intrinsically disordered regions (IDRs) are critical for cellular function, yet often appear to
lack sequence conservation when assessed by multiple sequence alignments. This raises …
lack sequence conservation when assessed by multiple sequence alignments. This raises …
Conserved molecular recognition by an intrinsically disordered region in the absence of sequence conservation
Intrinsically disordered regions (IDRs) are critical for cellular function yet often appear to lack
sequence conservation when assessed by multiple sequence alignments. This raises the …
sequence conservation when assessed by multiple sequence alignments. This raises the …
Mechanism of coupled folding-upon-binding of an intrinsically disordered protein
Intrinsically disordered proteins (IDPs), which in isolation do not adopt a well-defined tertiary
structure but instead populate a structurally heterogeneous ensemble of interconverting …
structure but instead populate a structurally heterogeneous ensemble of interconverting …
[PDF][PDF] Tuning Free Energy by Backbone Conformational Entropy: A Strategy from Disordered Proteins
AC Chia-en - Biophysical Journal, 2018 - cell.com
Intrinsically disordered proteins (IDPs) or regions (IDRs) exhibit biological activities and play
important roles in cell signaling and regulation, yet they do not form a well-defined three …
important roles in cell signaling and regulation, yet they do not form a well-defined three …
Demultiplexing the heterogeneous conformational ensembles of intrinsically disordered proteins into structurally similar clusters
Intrinsically disordered proteins (IDPs) populate a range of conformations that are best
described by a heterogeneous ensemble. Grouping an IDP ensemble into “structurally …
described by a heterogeneous ensemble. Grouping an IDP ensemble into “structurally …
[HTML][HTML] Binding mechanisms of intrinsically disordered proteins: theory, simulation, and experiment
In recent years, protein science has been revolutionized by the discovery of intrinsically
disordered proteins (IDPs). In contrast to the classical paradigm that a given protein …
disordered proteins (IDPs). In contrast to the classical paradigm that a given protein …