Identification of novel alternative splicing biomarkers for breast cancer with LC/MS/MS and RNA-Seq

F Zhang, CK Deng, M Wang, B Deng, R Barber… - BMC …, 2020 - Springer
Background Alternative splicing isoforms have been reported as a new and robust class of
diagnostic biomarkers. Over 95% of human genes are estimated to be alternatively spliced …

Novel alternative splicing isoform biomarkers identification from high-throughput plasma proteomics profiling of breast cancer

F Zhang, M Wang, T Michael, R Drabier - BMC systems biology, 2013 - Springer
Background In the biopharmaceutical industry, biomarkers define molecular taxonomies of
patients and diseases and serve as surrogate endpoints in early-phase drug trials …

Identification of alternative splicing markers for breast cancer

JP Venables, R Klinck, A Bramard, L Inkel… - Cancer research, 2008 - AACR
Breast cancer is the most common cause of cancer death among women under age 50
years, so it is imperative to identify molecular markers to improve diagnosis and prognosis of …

A method for identifying discriminative isoform-specific peptides for clinical proteomics application

F Zhang, JY Chen - BMC genomics, 2016 - Springer
Background Clinical proteomics application aims at solving a specific clinical problem within
the context of a clinical study. It has been growing rapidly in the field of biomarker discovery …

Identification of mRNA isoform switching in breast cancer

W Zhao, KA Hoadley, JS Parker, CM Perou - BMC genomics, 2016 - Springer
Background Alternative splicing provides a major mechanism to generate protein diversity.
Increasing evidence suggests a link of dysregulation of splicing associated with cancer …

Identification of splice variants and isoforms in transcriptomics and proteomics

T Su, MAR Hollas, RT Fellers… - Annual review of …, 2023 - annualreviews.org
Alternative splicing is pivotal to the regulation of gene expression and protein diversity in
eukaryotic cells. The detection of alternative splicing events requires specific omics …

Alternative splice variants, a new class of protein cancer biomarker candidates: findings in pancreatic cancer and breast cancer with systems biology implications

GS Omenn, AK Yocum, R Menon - Disease markers, 2010 - content.iospress.com
Alternative splicing plays an important role in protein diversity without increasing genome
size. Earlier thought to be uncommon, splicing appears to affect the majority of genes …

[PDF][PDF] Genomic analysis of RNA alternative splicing in cancers

Y Xing - Front Biosci, 2007 - article.imrpress.com
[Frontiers in Bioscience 12, 4034-4041, May 1, 2007] 4034 Genomic analysis of RNA
alternative splicing in cancers Yi Xing Depar Page 1 [Frontiers in Bioscience 12, 4034-4041 …

Alternative splicing in prostate and breast cancer

PM Watson, DK Watson - The Open Cancer Journal, 2010 - benthamopen.com
Alternative splicing of mRNA precursors allows the synthesis of multiple mRNAs from a
single primary transcript, thus contributing to proteomic diversity in higher eukaryotes …

SASD: the S ynthetic A lternative S plicing D atabase for identifying novel isoform from proteomics

F Zhang, R Drabier - BMC bioinformatics, 2013 - Springer
Background Alternative splicing is an important and widespread mechanism for generating
protein diversity and regulating protein expression. High-throughput identification and …