[HTML][HTML] Comparison of actionable events detected in cancer genomes by whole-genome sequencing, in silico whole-exome and mutation panels

P Ramarao-Milne, O Kondrashova, AM Patch, K Nones… - ESMO open, 2022 - Elsevier
Background Next-generation sequencing is used in cancer research to identify somatic and
germline mutations, which can predict sensitivity or resistance to therapies, and may be a …

Clinically actionable mutation profiles in patients with cancer identified by whole-genome sequencing

A Schuh, H Dreau, SJL Knight… - Molecular …, 2018 - molecularcasestudies.cshlp.org
Next-generation sequencing (NGS) efforts have established catalogs of mutations relevant
to cancer development. However, the clinical utility of this information remains largely …

Integrative omics analyses broaden treatment targets in human cancer

S Sengupta, SQ Sun, K Huang, C Oh, MH Bailey… - Genome medicine, 2018 - Springer
Background Although large-scale, next-generation sequencing (NGS) studies of cancers
hold promise for enabling precision oncology, challenges remain in integrating NGS with …

Next-generation sequencing and result interpretation in clinical oncology: challenges of personalized cancer therapy

YB Khotskaya, GB Mills… - Annual review of …, 2017 - annualreviews.org
The tools of next-generation sequencing (NGS) technology, such as targeted sequencing of
candidate cancer genes and whole-exome and-genome sequencing, coupled with …

Whole genome and exome sequencing reference datasets from a multi-center and cross-platform benchmark study

Y Zhao, LT Fang, T Shen, S Choudhari, K Talsania… - Scientific data, 2021 - nature.com
With the rapid advancement of sequencing technologies, next generation sequencing (NGS)
analysis has been widely applied in cancer genomics research. More recently, NGS has …

[PDF][PDF] In silico prescription of anticancer drugs to cohorts of 28 tumor types reveals targeting opportunities

C Rubio-Perez, D Tamborero, MP Schroeder… - Cancer cell, 2015 - cell.com
Large efforts dedicated to detect somatic alterations across tumor genomes/exomes are
expected to produce significant improvements in precision cancer medicine. However, high …

Lessons learned from the application of whole-genome analysis to the treatment of patients with advanced cancers

J Laskin, S Jones, S Aparicio… - Molecular …, 2015 - molecularcasestudies.cshlp.org
Given the success of targeted agents in specific populations it is expected that some degree
of molecular biomarker testing will become standard of care for many, if not all, cancers. To …

Whole-exome sequencing of metastatic cancer and biomarkers of treatment response

H Beltran, K Eng, JM Mosquera, A Sigaras… - JAMA …, 2015 - jamanetwork.com
Importance Understanding molecular mechanisms of response and resistance to anticancer
therapies requires prospective patient follow-up and clinical and functional validation of both …

Use of an integrated pan-cancer oncology enrichment next-generation sequencing assay to measure tumour mutational burden and detect clinically actionable …

V Pestinger, M Smith, T Sillo, JM Findlay… - Molecular diagnosis & …, 2020 - Springer
Introduction The identification of tumour mutational burden (TMB) as a biomarker of
response to programmed cell death protein 1 (PD-1) immunotherapy has necessitated the …

TruSight oncology 500: enabling comprehensive genomic profiling and biomarker reporting with targeted sequencing

C Zhao, T Jiang, J Hyun Ju, S Zhang, J Tao, Y Fu… - BioRxiv, 2020 - biorxiv.org
Background As knowledge of mechanisms that drive the development of cancer grows,
there has been corresponding growth in therapies specific to a mechanism. While these …