Parallel domestication, convergent evolution and duplicated gene recruitment in allopolyploid cotton

R Hovav, B Chaudhary, JA Udall, L Flagel… - Genetics, 2008 - academic.oup.com
A putative advantage of allopolyploidy is the possibility of differential selection of duplicated
(homeologous) genes originating from two different progenitor genomes. In this note we …

Gene-expression novelty in allopolyploid cotton: a proteomic perspective

G Hu, J Koh, MJ Yoo, S Chen, JF Wendel - Genetics, 2015 - academic.oup.com
Allopolyploidization is accompanied by changes in gene expression that are thought to
contribute to phenotypic diversification. Here we describe global changes in the single …

Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (Gossypium)

B Chaudhary, L Flagel, RM Stupar, JA Udall… - Genetics, 2009 - academic.oup.com
Polyploidy is an important force in the evolution of flowering plants. Genomic merger and
doubling induce an extensive array of genomic effects, including immediate and long-term …

Regulatory controls of duplicated gene expression during fiber development in allotetraploid cotton

J You, Z Liu, Z Qi, Y Ma, M Sun, L Su, H Niu, Y Peng… - Nature …, 2023 - nature.com
Polyploidy complicates transcriptional regulation and increases phenotypic diversity in
organisms. The dynamics of genetic regulation of gene expression between coresident …

Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant

R Hovav, JA Udall, B Chaudhary… - Proceedings of the …, 2008 - National Acad Sciences
Polyploidy is an important driver of eukaryotic evolution, evident in many animals, fungi, and
plants. One consequence of polyploidy is subfunctionalization, in which the ancestral …

Unraveling cis and trans regulatory evolution during cotton domestication

Y Bao, G Hu, CE Grover, J Conover, D Yuan… - Nature …, 2019 - nature.com
Cis and trans regulatory divergence underlies phenotypic and evolutionary diversification.
Relatively little is understood about the complexity of regulatory evolution accompanying …

Proteomic profiling of developing cotton fibers from wild and domesticated Gossypium barbadense

G Hu, J Koh, MJ Yoo, K Grupp, S Chen… - New …, 2013 - Wiley Online Library
Pima cotton (G ossypium barbadense) is widely cultivated because of its long, strong seed
trichomes ('fibers') used for premium textiles. These agronomically advanced fibers were …

Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement

ZJ Chen, A Sreedasyam, A Ando, Q Song… - Nature …, 2020 - nature.com
Polyploidy is an evolutionary innovation for many animals and all flowering plants, but its
impact on selection and domestication remains elusive. Here we analyze genome evolution …

Conservation and Divergence in Duplicated Fiber Coexpression Networks Accompanying Domestication of the Polyploid Gossypium hirsutum L

JP Gallagher, CE Grover, G Hu… - G3: Genes …, 2020 - academic.oup.com
Gossypium hirsutum L.(Upland cotton) has an evolutionary history involving inter-genomic
hybridization, polyploidization, and subsequent domestication. We analyzed the …

Genomic insights into divergence and dual domestication of cultivated allotetraploid cottons

L Fang, H Gong, Y Hu, C Liu, B Zhou, T Huang… - Genome Biology, 2017 - Springer
Background Cotton has been cultivated and used to make fabrics for at least 7000 years.
Two allotetraploid species of great commercial importance, Gossypium hirsutum and …