Cross-link scrambling in peptide pairs
L de Jong, W Roseboom, G Kramer - bioRxiv, 2022 - biorxiv.org
Identification of peptides and their linked amino acids from chemically cross-linked protein
complexes with bifunctional N-hydroxysuccinimidyl (NHS) esters can reveal interacting …
complexes with bifunctional N-hydroxysuccinimidyl (NHS) esters can reveal interacting …
Optimizing the enrichment of cross‐linked products for mass spectrometric protein analysis
R Fritzsche, CH Ihling, M Götze… - … Communications in Mass …, 2012 - Wiley Online Library
RATIONALE Chemical cross‐linking in combination with a mass spectrometric analysis of
the created cross‐linked products is an area of growing interest for deriving low‐resolution …
the created cross‐linked products is an area of growing interest for deriving low‐resolution …
Probing structures of large protein complexes using zero-length cross-linking
RF Rivera-Santiago, S Sriswasdi, SL Harper… - Methods, 2015 - Elsevier
Structural mass spectrometry (MS) is a field with growing applicability for addressing
complex biophysical questions regarding proteins and protein complexes. One of the major …
complex biophysical questions regarding proteins and protein complexes. One of the major …
Visualizing the ensemble structures of protein complexes using chemical cross-linking coupled with mass spectrometry
Graphical Abstract Abstract Chemical cross-linking coupled with mass spectrometry (CXMS)
identifies protein residues that are close in space, and has been increasingly used for …
identifies protein residues that are close in space, and has been increasingly used for …
Basic pH reversed-phase liquid chromatography (bRPLC) in combination with tip-based strong cation exchange (SCX-Tip), ReST, an efficient approach for large …
Z Wu, J Li, L Huang, X Zhang - Analytica Chimica Acta, 2021 - Elsevier
Chemical cross-linking in combination with mass spectrometry (XL-MS) has emerged as a
useful method for structural elucidation of proteins and protein complexes. Due to the low …
useful method for structural elucidation of proteins and protein complexes. Due to the low …
Noncovalently associated peptides observed during liquid chromatography-mass spectrometry and their effect on cross-link analyses
Cross-linking mass spectrometry draws structural information from covalently linked peptide
pairs. When these links do not match to previous structural models, they may indicate …
pairs. When these links do not match to previous structural models, they may indicate …
CLAUDIO: automated structural analysis of cross-linking data
A Röhl, E Netz, O Kohlbacher, H Elhabashy - Bioinformatics, 2024 - academic.oup.com
Motivation Cross-linking mass spectrometry has made remarkable advancements in the
high-throughput characterization of protein structures and interactions. The resulting pairs of …
high-throughput characterization of protein structures and interactions. The resulting pairs of …
Novel cross-linkers for obtaining structure information on molecule complexes
L De Jong, PT Kasper, JW Back… - US Patent App. 12 …, 2009 - Google Patents
Such cross-linked biomolecules and/or biomolecular com plexes, a method for cleavage
and reduction of Such cross linked biomolecules and/or biomolecular complexes, a method …
and reduction of Such cross linked biomolecules and/or biomolecular complexes, a method …
[PDF][PDF] Accommodating protein dynamics in the modeling of chemical crosslinks
Chemical crosslinking can identify the neighborhood relationships between specific amino-
acid residues in proteins. The interpretation of crosslinking data is typically performed using …
acid residues in proteins. The interpretation of crosslinking data is typically performed using …
Sequence-specific model for peptide retention time prediction in strong cation exchange chromatography
D Gussakovsky, H Neustaeter, V Spicer… - Analytical …, 2017 - ACS Publications
The development of a peptide retention prediction model for strong cation exchange (SCX)
separation on a Polysulfoethyl A column is reported. Off-line 2D LC-MS/MS analysis (SCX …
separation on a Polysulfoethyl A column is reported. Off-line 2D LC-MS/MS analysis (SCX …