The long and short of doubling down: polyploidy, epigenetics, and the temporal dynamics of genome fractionation
We consider the rapidly advancing discipline of plant evolutionary genomics, with a focus on
the evolution of polyploid genomes. In many lineages, polyploidy is followed by 'biased …
the evolution of polyploid genomes. In many lineages, polyploidy is followed by 'biased …
Gene duplicability of core genes is highly consistent across all angiosperms
Gene duplication is an important mechanism for adding to genomic novelty. Hence, which
genes undergo duplication and are preserved following duplication is an important question …
genes undergo duplication and are preserved following duplication is an important question …
[HTML][HTML] Plant polyploidy: origin, evolution, and its influence on crop domestication
The prevalence and recurrence of polyploidization in plant species make it one of the most
important evolutionary events in plants, and as a result, polyploidization is an extensively …
important evolutionary events in plants, and as a result, polyploidization is an extensively …
Genome evolution in polyploids
JF Wendel - Plant molecular evolution, 2000 - Springer
Polyploidy is a prominent process in plants and has been significant in the evolutionary
history of vertebrates and other eukaryotes. In plants, interdisciplinary approaches …
history of vertebrates and other eukaryotes. In plants, interdisciplinary approaches …
Cis- and trans-regulatory divergence between progenitor species determines gene-expression novelty in Arabidopsis allopolyploids
Gene-expression divergence between species shapes morphological evolution, but the
molecular basis is largely unknown. Here we show cis-and trans-regulatory elements and …
molecular basis is largely unknown. Here we show cis-and trans-regulatory elements and …
The impact of widespread regulatory neofunctionalization on homeolog gene evolution following whole-genome duplication in maize
Whole-genome duplications are a widespread feature of plant genome evolution, having
been detected in all flowering plant lineages. Despite the prevalence of these events, the …
been detected in all flowering plant lineages. Despite the prevalence of these events, the …
Cis–trans controls and regulatory novelty accompanying allopolyploidization
Allopolyploidy is a prevalent process in plants, having important physiological, ecological
and evolutionary consequences. Transcriptomic responses to genomic merger and doubling …
and evolutionary consequences. Transcriptomic responses to genomic merger and doubling …
Impact of natural genetic variation on the transcriptome of autotetraploid Arabidopsis thaliana
Polyploidy, the presence of more than two complete sets of chromosomes in an organism,
has significantly shaped the genomes of angiosperms during evolution. Two forms of …
has significantly shaped the genomes of angiosperms during evolution. Two forms of …
Functional divergence between subgenomes and gene pairs after whole genome duplications
Z Liang, JC Schnable - Molecular plant, 2018 - cell.com
Gene loss following whole genome duplication (WGD) is often biased, with one subgenome
retaining more ancestral genes and the other sustaining more gene deletions. While bias …
retaining more ancestral genes and the other sustaining more gene deletions. While bias …
[HTML][HTML] The role of genomic structural variation in the genetic improvement of polyploid crops
Many of our major crop species are polyploids, containing more than one genome or set of
chromosomes. Polyploid crops present unique challenges, including difficulties in genome …
chromosomes. Polyploid crops present unique challenges, including difficulties in genome …