Impact of transposable elements on the organization and function of allopolyploid genomes

C Parisod, K Alix, J Just, M Petit, V Sarilar… - New …, 2010 - Wiley Online Library
Transposable elements (TEs) represent an important fraction of plant genomes and are
likely to play a pivotal role in fuelling genome reorganization and functional changes …

Evolutionary dynamics of duplicated genes in plants

A Lawton-Rauh - Molecular phylogenetics and evolution, 2003 - Elsevier
Gene duplication, arising from region-specific duplication or genome-wide polyploidization,
is a prominent feature in plant genome evolution. Understanding the mechanisms …

[HTML][HTML] Patterns of polymorphism and selection in the subgenomes of the allopolyploid Arabidopsis kamchatica

T Paape, RV Briskine, G Halstead-Nussloch… - Nature …, 2018 - nature.com
Genome duplication is widespread in wild and crop plants. However, little is known about
genome-wide selection in polyploids due to the complexity of duplicated genomes. In …

[HTML][HTML] Evolution of plant genome architecture

JF Wendel, SA Jackson, BC Meyers, RA Wing - Genome biology, 2016 - Springer
We have witnessed an explosion in our understanding of the evolution and structure of plant
genomes in recent years. Here, we highlight three important emergent realizations:(1) that …

The evolutionary dynamics of plant duplicate genes

RC Moore, MD Purugganan - Current opinion in plant biology, 2005 - Elsevier
Given the prevalence of duplicate genes and genomes in plant species, the study of their
evolutionary dynamics has been a focus of study in plant evolutionary genetics over the past …

Mechanisms of genomic rearrangements and gene expression changes in plant polyploids

ZJ Chen, Z Ni - Bioessays, 2006 - Wiley Online Library
Polyploidy is produced by multiplication of a single genome (autopolyploid) or combination
of two or more divergent genomes (allopolyploid). The available data obtained from the …

The role of hybridization in plant speciation

PS Soltis, DE Soltis - Annual review of plant biology, 2009 - annualreviews.org
The importance of hybridization in plant speciation and evolution has been debated for
decades, with opposing views of hybridization as either a creative evolutionary force or …

Structural variation and genome complexity: is dispensable really dispensable?

F Marroni, S Pinosio, M Morgante - Current Opinion in Plant Biology, 2014 - Elsevier
Highlights•Structural variants are the major components of dispensable genome.•Structural
variants might have important functional consequences.•Next generation sequencing is a …

Next‐generation sequencing and genome evolution in allopolyploids

RJA Buggs, S Renny‐Byfield, M Chester… - American Journal of …, 2012 - Wiley Online Library
• Premise of the study: Hybridization and polyploidization (allopolyploidy) are ubiquitous in
the evolution of plants, but tracing the origins and subsequent evolution of the constituent …

[HTML][HTML] How the pan-genome is changing crop genomics and improvement

R Della Coletta, Y Qiu, S Ou, MB Hufford, CN Hirsch - Genome biology, 2021 - Springer
Crop genomics has seen dramatic advances in recent years due to improvements in
sequencing technology, assembly methods, and computational resources. These advances …