The effects of hybridization and genome doubling in plant evolution via allopolyploidy

T Qiu, Z Liu, B Liu - Molecular biology reports, 2020 - Springer
Polyploidy is a pervasive and recurring phenomenon across the tree of life, which occurred
at variable time scales, ecological amplitudes and cell types, and is especially prominent in …

[HTML][HTML] How the pan-genome is changing crop genomics and improvement

R Della Coletta, Y Qiu, S Ou, MB Hufford, CN Hirsch - Genome biology, 2021 - Springer
Crop genomics has seen dramatic advances in recent years due to improvements in
sequencing technology, assembly methods, and computational resources. These advances …

[HTML][HTML] Gene loss and silencing in Tragopogon miscellus (Asteraceae): comparison of natural and synthetic allotetraploids

RJA Buggs, AN Doust, JA Tate, J Koh, K Soltis… - Heredity, 2009 - nature.com
Whole-genome duplication (polyploidisation) is a widespread mechanism of speciation in
plants. Over time, polyploid genomes tend towards a more diploid-like state, through …

Genetic and epigenetic aspects of polyploid evolution in plants

A Madlung, JF Wendel - Cytogenetic and genome research, 2013 - karger.com
Polyploidy, the condition of possessing more than 2 complete chromosome sets in the same
nucleus, is frequent in nature and has implications for a species' prospects for evolution …

Doubling down on genomes: polyploidy and crop plants

S Renny‐Byfield, JF Wendel - American journal of botany, 2014 - Wiley Online Library
Polyploidy, or whole genome multiplication, is ubiquitous among angiosperms. Many crop
species are relatively recent allopolyploids, resulting from interspecific hybridization and …

Polyploidy and genome evolution in plants

KL Adams, JF Wendel - Current opinion in plant biology, 2005 - Elsevier
Genome doubling (polyploidy) has been and continues to be a pervasive force in plant
evolution. Modern plant genomes harbor evidence of multiple rounds of past …

[HTML][HTML] Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin

RJA Buggs, S Chamala, W Wu, JA Tate, PS Schnable… - Current biology, 2012 - cell.com
The predictability of evolution is debatable, with recent evidence suggesting that outcomes
may be constrained by gene interaction networks [1]. Whole-genome duplication (WGD; …

Do plants have a one-way ticket to genomic obesity?

JL Bennetzen, EA Kellogg - The Plant Cell, 1997 - ncbi.nlm.nih.gov
Perhaps the most contentious issues discussed at a recent Keystone Symposium (“The
Evolution of Plant Development”; held in Taos, NM, in January 1997) were the origin and …

[HTML][HTML] Asymmetric epigenome maps of subgenomes reveal imbalanced transcription and distinct evolutionary trends in Brassica napus

Q Zhang, P Guan, L Zhao, M Ma, L Xie, Y Li, R Zheng… - Molecular Plant, 2021 - cell.com
The complexity of the epigenome landscape and transcriptional regulation is significantly
increased during plant polyploidization, which drives genome evolution and contributes to …

Genome-wide dosage-dependent and-independent regulation contributes to gene expression and evolutionary novelty in plant polyploids

X Shi, C Zhang, DK Ko, ZJ Chen - Molecular Biology and …, 2015 - academic.oup.com
Polyploidy provides evolutionary and morphological novelties in many plants and some
animals. However, the role of genome dosage and composition in gene expression changes …