Surviving a Genome Collision: Genomic Signatures of Allopolyploidization in the Recent Crop Species Brassica napus

B Samans, B Chalhoub, RJ Snowdon - The plant genome, 2017 - Wiley Online Library
Polyploidization has played a major role in crop plant evolution, leading to advantageous
traits that have been selected by humans. Here, we describe restructuring patterns in the …

Genome size evolution in plants

MD Bennett, IJ Leitch - The evolution of the genome, 2005 - Elsevier
Publisher Summary This chapter provides an overview of the current state of knowledge
concerning genome size evolution in plants. It includes a review of available data, the …

Quantifying whole transcriptome size, a prerequisite for understanding transcriptome evolution across species: an example from a plant allopolyploid

JE Coate, JJ Doyle - Genome biology and evolution, 2010 - academic.oup.com
Evolutionary biologists are increasingly comparing gene expression patterns across
species. Due to the way in which expression assays are normalized, such studies provide …

Whole-genome duplication and plant macroevolution

JW Clark, PCJ Donoghue - Trends in plant science, 2018 - cell.com
Whole-genome duplication (WGD) is characteristic of almost all fundamental lineages of
land plants. Unfortunately, the timings of WGD events are loosely constrained and …

Genetic and epigenetic interactions in allopolyploid plants

L Comai - Plant Gene Silencing, 2000 - Springer
Allopolyploid plants are hybrids that contain two copies of the genome from each parent.
Whereas wild and cultivated allopolyploids are well adapted, man-made allopolyploids are …

Genomic and meiotic changes accompanying polyploidization

F Blasio, P Prieto, M Pradillo, T Naranjo - Plants, 2022 - mdpi.com
Hybridization and polyploidy have been considered as significant evolutionary forces in
adaptation and speciation, especially among plants. Interspecific gene flow generates novel …

Patterns, mechanisms, and consequences of homoeologous exchange in allopolyploid angiosperms: a genomic and epigenomic perspective

SK Deb, PP Edger, JC Pires, MR McKain - New Phytologist, 2023 - Wiley Online Library
Allopolyploids result from hybridization between different evolutionary lineages coupled with
genome doubling. Homoeologous chromosomes (chromosomes with common shared …

[HTML][HTML] Plant pan-genomics: recent advances, new challenges, and roads ahead

W Li, J Liu, H Zhang, Z Liu, Y Wang, L Xing… - Journal of Genetics and …, 2022 - Elsevier
Pan-genomics can encompass most of the genetic diversity of a species or population and
has proved to be a powerful tool for studying genomic evolution and the origin and …

Factors influencing gene family size variation among related species in a plant family, Solanaceae

P Wang, BM Moore, NL Panchy, F Meng… - Genome biology and …, 2018 - academic.oup.com
Gene duplication and loss contribute to gene content differences as well as phenotypic
divergence across species. However, the extent to which gene content varies among closely …

Conservation and divergence of transcriptomic and epigenomic variation in maize hybrids

G He, B Chen, X Wang, X Li, J Li, H He, M Yang, L Lu… - Genome biology, 2013 - Springer
Background Recent genome-wide studies suggested that in addition to genetic variations,
epigenetic variations may also be associated with differential gene expression and growth …