Landmarks in the history of selective sweeps

M Panigrahi, D Rajawat, SS Nayak, K Ghildiyal… - Animal …, 2023 - Wiley Online Library
Half a century ago, a seminal article on the hitchhiking effect by Smith and Haigh
inaugurated the concept of the selection signature. Selective sweeps are characterised by …

Selection signatures in livestock genome: A review of concepts, approaches and applications

KA Saravanan, M Panigrahi, H Kumar, B Bhushan… - Livestock Science, 2020 - Elsevier
Livestock populations have been consistently improving in terms of performance and
productivity by selective breeding over the centuries. These selection strategies are …

Identification of large selective sweeps associated with major genes in cattle

T Druet, L Pérez‐Pardal, C Charlier… - Animal genetics, 2013 - Wiley Online Library
Selection for new favorable variants can lead to selective sweeps. However, such sweeps
might be rare in the evolution of different species for which polygenic adaptation or selection …

Population differentiation as a test for selective sweeps

H Chen, N Patterson, D Reich - Genome research, 2010 - genome.cshlp.org
Selective sweeps can increase genetic differentiation among populations and cause allele
frequency spectra to depart from the expectation under neutrality. We present a likelihood …

Genetic hitchhiking versus background selection: the controversy and its implications

W Stephan - … Transactions of the Royal Society B …, 2010 - royalsocietypublishing.org
The controversy on the relative importance of background selection (BGS; against
deleterious mutations) and genetic hitchhiking (associated with positive directional …

Mapping signatures of positive selection in the genome of livestock

S Qanbari, H Simianer - Livestock science, 2014 - Elsevier
Human driven selection during domestication and subsequent breed formation and
breeding has left detectable signatures within the genome of livestock breeds. The …

Detection of selective sweeps in structured populations: a comparison of recent methods

AI Vatsiou, E Bazin, OE Gaggiotti - Molecular ecology, 2016 - Wiley Online Library
Identifying genomic regions targeted by positive selection has been a long‐standing interest
of evolutionary biologists. This objective was difficult to achieve until the recent emergence …

Antagonistic versus nonantagonistic models of balancing selection: characterizing the relative timescales and hitchhiking effects of partial selective sweeps

T Connallon, AG Clark - Evolution, 2013 - academic.oup.com
Antagonistically selected alleles-–those with opposing fitness effects between sexes,
environments, or fitness components-–represent an important component of additive genetic …

A meta-assembly of selection signatures in cattle

IAS Randhawa, MS Khatkar, PC Thomson… - PloS one, 2016 - journals.plos.org
Since domestication, significant genetic improvement has been achieved for many traits of
commercial importance in cattle, including adaptation, appearance and production. In …

The distinctive footprints of local hitchhiking in a varied environment and global hitchhiking in a subdivided population

N Bierne - Evolution, 2010 - academic.oup.com
Loci with higher levels of population differentiation than the neutral expectation are
traditionally interpreted as evidence of ongoing selection that varies in space. This article …