Gaussian process regression for survival time prediction with genome-wide gene expression
Predicting the survival time of a cancer patient based on his/her genome-wide gene
expression remains a challenging problem. For certain types of cancer, the effects of gene …
expression remains a challenging problem. For certain types of cancer, the effects of gene …
Survival prediction using gene expression data: a review and comparison
WN Van Wieringen, D Kun, R Hampel… - Computational statistics & …, 2009 - Elsevier
Knowledge of transcription of the human genome might greatly enhance our understanding
of cancer. In particular, gene expression may be used to predict the survival of cancer …
of cancer. In particular, gene expression may be used to predict the survival of cancer …
CASPAR: a hierarchical bayesian approach to predict survival times in cancer from gene expression data
L Kaderali, T Zander, U Faigle, J Wolf… - …, 2006 - academic.oup.com
Motivation: DNA microarrays allow the simultaneous measurement of thousands of gene
expression levels in any given patient sample. Gene expression data have been shown to …
expression levels in any given patient sample. Gene expression data have been shown to …
Bayesian data integration and variable selection for pan-cancer survival prediction using protein expression data
Accurate prognostic prediction using molecular information is a challenging area of
research, which is essential to develop precision medicine. In this paper, we develop …
research, which is essential to develop precision medicine. In this paper, we develop …
An integrative pathway-based clinical–genomic model for cancer survival prediction
X Chen, L Wang, H Ishwaran - Statistics & probability letters, 2010 - Elsevier
Prediction models that use gene expression levels are now being proposed for personalized
treatment of cancer, but building accurate models that are easy to interpret remains a …
treatment of cancer, but building accurate models that are easy to interpret remains a …
Assessment of performance of survival prediction models for cancer prognosis
HC Chen, RL Kodell, KF Cheng, JJ Chen - BMC medical research …, 2012 - Springer
Background Cancer survival studies are commonly analyzed using survival-time prediction
models for cancer prognosis. A number of different performance metrics are used to …
models for cancer prognosis. A number of different performance metrics are used to …
Censored data regression in high-dimension and low-sample size settings for genomic applications
H Li - Statistical Advances in Biomedical Sciences, 2006 - Wiley Online Library
High-throughput technologies generate many types of high-dimensional genomic and
proteomics data. Important examples include DNA microarray technology, which permits …
proteomics data. Important examples include DNA microarray technology, which permits …
Semi-supervised methods to predict patient survival from gene expression data
E Bair, R Tibshirani - PLoS biology, 2004 - journals.plos.org
An important goal of DNA microarray research is to develop tools to diagnose cancer more
accurately based on the genetic profile of a tumor. There are several existing techniques in …
accurately based on the genetic profile of a tumor. There are several existing techniques in …
Gaussian process regression for survival data with competing risks
JE Barrett, ACC Coolen - arXiv preprint arXiv:1312.1591, 2013 - arxiv.org
We apply Gaussian process (GP) regression, which provides a powerful non-parametric
probabilistic method of relating inputs to outputs, to survival data consisting of time-to-event …
probabilistic method of relating inputs to outputs, to survival data consisting of time-to-event …
[HTML][HTML] Review of statistical methods for survival analysis using genomic data
S Lee, H Lim - Genomics & informatics, 2019 - ncbi.nlm.nih.gov
Survival analysis mainly deals with the time to event, including death, onset of disease, and
bankruptcy. The common characteristic of survival analysis is that it contains “censored” …
bankruptcy. The common characteristic of survival analysis is that it contains “censored” …