[HTML][HTML] Prediction of protein–ligand binding affinity from sequencing data with interpretable machine learning
Protein–ligand interactions are increasingly profiled at high throughput using affinity
selection and massively parallel sequencing. However, these assays do not provide the …
selection and massively parallel sequencing. However, these assays do not provide the …
From proteins to ligands: decoding deep learning methods for binding affinity prediction
Accurate in silico prediction of protein–ligand binding affinity is important in the early stages
of drug discovery. Deep learning-based methods exist but have yet to overtake more …
of drug discovery. Deep learning-based methods exist but have yet to overtake more …
Statistical and machine learning approaches to predicting protein–ligand interactions
LJ Colwell - Current opinion in structural biology, 2018 - Elsevier
Data driven computational approaches to predicting protein–ligand binding are currently
achieving unprecedented levels of accuracy on held-out test datasets. Up until now …
achieving unprecedented levels of accuracy on held-out test datasets. Up until now …
Protein-protein interaction networks and biology—what's the connection?
Protein-protein interaction networks and biology—what's the connection? | Nature Biotechnology
Skip to main content Thank you for visiting nature.com. You are using a browser version with …
Skip to main content Thank you for visiting nature.com. You are using a browser version with …
Artificial intelligence in the prediction of protein–ligand interactions: recent advances and future directions
New drug production, from target identification to marketing approval, takes over 12 years
and can cost around $2.6 billion. Furthermore, the COVID-19 pandemic has unveiled the …
and can cost around $2.6 billion. Furthermore, the COVID-19 pandemic has unveiled the …
Structural and sequence similarity makes a significant impact on machine-learning-based scoring functions for protein–ligand interactions
Y Li, J Yang - Journal of chemical information and modeling, 2017 - ACS Publications
The prediction of protein–ligand binding affinity has recently been improved remarkably by
machine-learning-based scoring functions. For example, using a set of simple descriptors …
machine-learning-based scoring functions. For example, using a set of simple descriptors …
Learning from the ligand: using ligand-based features to improve binding affinity prediction
Motivation Machine learning scoring functions for protein–ligand binding affinity prediction
have been found to consistently outperform classical scoring functions. Structure-based …
have been found to consistently outperform classical scoring functions. Structure-based …
[HTML][HTML] Predicting or pretending: artificial intelligence for protein-ligand interactions lack of sufficiently large and unbiased datasets
Predicting protein-ligand interactions using artificial intelligence (AI) models has attracted
great interest in recent years. However, data-driven AI models unequivocally suffer from a …
great interest in recent years. However, data-driven AI models unequivocally suffer from a …
Inferring protein–protein interactions through high-throughput interaction data from diverse organisms
Y Liu, N Liu, H Zhao - Bioinformatics, 2005 - academic.oup.com
Motivation: Identifying protein–protein interactions is critical for understanding cellular
processes. Because protein domains represent binding modules and are responsible for the …
processes. Because protein domains represent binding modules and are responsible for the …
[HTML][HTML] Decoding the protein–ligand interactions using parallel graph neural networks
Protein–ligand interactions (PLIs) are essential for biochemical functionality and their
identification is crucial for estimating biophysical properties for rational therapeutic design …
identification is crucial for estimating biophysical properties for rational therapeutic design …