An analysis of proteochemometric and conformal prediction machine learning protein-ligand binding affinity models
Protein-ligand binding affinity is a key pharmacodynamic endpoint in drug discovery. Sole
reliance on experimental design, make, and test cycles is costly and time consuming …
reliance on experimental design, make, and test cycles is costly and time consuming …
A versatile deep learning-based protein-ligand interaction prediction model for accurate binding affinity scoring and virtual screening
Protein--ligand interaction (PLI) prediction is critical in drug discovery, aiding the
identification and enhancement of molecules that effectively bind to target proteins. Despite …
identification and enhancement of molecules that effectively bind to target proteins. Despite …
Latent biases in machine learning models for predicting binding affinities using popular data sets
Drug design involves the process of identifying and designing molecules that bind well to a
given receptor. A vital computational component of this process is the protein–ligand …
given receptor. A vital computational component of this process is the protein–ligand …
PIGNet2: a versatile deep learning-based protein–ligand interaction prediction model for binding affinity scoring and virtual screening
Prediction of protein–ligand interactions (PLI) plays a crucial role in drug discovery as it
guides the identification and optimization of molecules that effectively bind to target proteins …
guides the identification and optimization of molecules that effectively bind to target proteins …
Statistical and machine learning approaches to predicting protein–ligand interactions
LJ Colwell - Current opinion in structural biology, 2018 - Elsevier
Data driven computational approaches to predicting protein–ligand binding are currently
achieving unprecedented levels of accuracy on held-out test datasets. Up until now …
achieving unprecedented levels of accuracy on held-out test datasets. Up until now …
Three-dimensional convolutional neural networks and a cross-docked data set for structure-based drug design
PG Francoeur, T Masuda, J Sunseri, A Jia… - Journal of chemical …, 2020 - ACS Publications
One of the main challenges in drug discovery is predicting protein–ligand binding affinity.
Recently, machine learning approaches have made substantial progress on this task …
Recently, machine learning approaches have made substantial progress on this task …
Improved protein–ligand binding affinity prediction with structure-based deep fusion inference
Predicting accurate protein–ligand binding affinities is an important task in drug discovery
but remains a challenge even with computationally expensive biophysics-based energy …
but remains a challenge even with computationally expensive biophysics-based energy …
KDEEP: Protein–Ligand Absolute Binding Affinity Prediction via 3D-Convolutional Neural Networks
Accurately predicting protein–ligand binding affinities is an important problem in
computational chemistry since it can substantially accelerate drug discovery for virtual …
computational chemistry since it can substantially accelerate drug discovery for virtual …
Comparison of scaling methods to obtain calibrated probabilities of activity for protein–ligand predictions
In the context of bioactivity prediction, the question of how to calibrate a score produced by a
machine learning method into a probability of binding to a protein target is not yet …
machine learning method into a probability of binding to a protein target is not yet …
Fabind: Fast and accurate protein-ligand binding
Modeling the interaction between proteins and ligands and accurately predicting their
binding structures is a critical yet challenging task in drug discovery. Recent advancements …
binding structures is a critical yet challenging task in drug discovery. Recent advancements …