Re-sequencing and optical mapping reveals misassemblies and real inversions on Corynebacterium pseudotuberculosis genomes
The number of draft genomes deposited in Genbank from the National Center for
Biotechnology Information (NCBI) is higher than the complete ones. Draft genomes are …
Biotechnology Information (NCBI) is higher than the complete ones. Draft genomes are …
Whole-genome optical mapping reveals a mis-assembly between two rRNA operons of Corynebacterium pseudotuberculosis strain 1002
Background Studies have detected mis-assemblies in genomes of the species
Corynebacterium pseudotuberculosis. These new discover have been possible due to the …
Corynebacterium pseudotuberculosis. These new discover have been possible due to the …
[HTML][HTML] Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study
Due to the advent of the so-called Next-Generation Sequencing (NGS) technologies the
amount of monetary and temporal resources for whole-genome sequencing has been …
amount of monetary and temporal resources for whole-genome sequencing has been …
A case study into microbial genome assembly gap sequences and finishing strategies
SM Utturkar, DM Klingeman, RA Hurt Jr… - Frontiers in …, 2017 - frontiersin.org
This study characterized regions of DNA which remained unassembled by either PacBio
and Illumina sequencing technologies for seven bacterial genomes. Two genomes were …
and Illumina sequencing technologies for seven bacterial genomes. Two genomes were …
An overlooked phenomenon: complex interactions of potential error sources on the quality of bacterial de novo genome assemblies
Background Parameters adversely affecting the contiguity and accuracy of the assemblies
from Illumina next-generation sequencing (NGS) are well described. However, past studies …
from Illumina next-generation sequencing (NGS) are well described. However, past studies …
High efficiency application of a mate-paired library from next-generation sequencing to postlight sequencing: Corynebacterium pseudotuberculosis as a case study for …
With the advent of high-throughput DNA sequencing platforms, there has been a reduction
in the cost and time of sequencing. With these advantages, new challenges have emerged …
in the cost and time of sequencing. With these advantages, new challenges have emerged …
[HTML][HTML] Simplifier: a web tool to eliminate redundant NGS contigs
Modern genomic sequencing technologies produce a large amount of data with reduced
cost per base; however, this data consists of short reads. This reduction in the size of the …
cost per base; however, this data consists of short reads. This reduction in the size of the …
Tips and tricks for the assembly of a Corynebacterium pseudotuberculosis genome using a semiconductor sequencer
New sequencing platforms have enabled rapid decoding of complete prokaryotic genomes
at relatively low cost. The I on T orrent platform is an example of these technologies …
at relatively low cost. The I on T orrent platform is an example of these technologies …
GFinisher: a new strategy to refine and finish bacterial genome assemblies
Despite the development in DNA sequencing technology, improving the number and the
length of reads, the process of reconstruction of complete genome sequences, the so called …
length of reads, the process of reconstruction of complete genome sequences, the so called …
Hound: a novel tool for automated mapping of genotype to phenotype in bacterial genomes assembled de novo
C Reding, N Satapoomin… - Briefings in …, 2024 - academic.oup.com
Increasing evidence suggests that microbial species have a strong within species genetic
heterogeneity. This can be problematic for the analysis of prokaryote genomes, which …
heterogeneity. This can be problematic for the analysis of prokaryote genomes, which …