Characterization of a promiscuous DNA sulfur binding domain and application in site-directed RNA base editing
W Hu, B Yang, Q Xiao, Y Wang, Y Shuai… - Nucleic Acids …, 2023 - academic.oup.com
Phosphorothioate (PT)-modification was discovered in prokaryotes and is involved in many
biological functions such as restriction-modification systems. PT-modification can be …
biological functions such as restriction-modification systems. PT-modification can be …
[PDF][PDF] Profile and relaxation of sequence-specificity of DNA sulfur binding domains facilitate new nucleic acid detection platform
Y Shuai, A Xu, J Li, Z Han, D Ma, H Duan… - Science …, 2023 - researchgate.net
DNA phosphorothioate (PT)-modification, with a non-bridging oxygen in the phosphodiester
backbone substituted by sulfur, is an epigenetic marker in prokaryotes and involved in the …
backbone substituted by sulfur, is an epigenetic marker in prokaryotes and involved in the …
Site-directed RNA editing by adenosine deaminase acting on RNA for correction of the genetic code in gene therapy
MTA Azad, S Bhakta, T Tsukahara - Gene therapy, 2017 - nature.com
Site-directed RNA editing is an important technique for correcting gene sequences and
ultimately tuning protein function. In this study, we engineered the deaminase domain of …
ultimately tuning protein function. In this study, we engineered the deaminase domain of …
DNA backbone interactions impact the sequence specificity of DNA sulfur-binding domains: revelations from structural analyses
H Yu, J Li, G Liu, G Zhao, Y Wang, W Hu… - Nucleic Acids …, 2020 - academic.oup.com
The sulfur atom of phosphorothioated DNA (PT-DNA) is coordinated by a surface cavity in
the conserved sulfur-binding domain (SBD) of type IV restriction enzymes. However, some …
the conserved sulfur-binding domain (SBD) of type IV restriction enzymes. However, some …
Precise and efficient C-to-U RNA base editing with SNAP-CDAR-S
N Latifi, AM Mack, I Tellioglu, S Di Giorgio… - Nucleic Acids …, 2023 - academic.oup.com
Site-directed RNA base editing enables the transient and dosable change of genetic
information and represents a recent strategy to manipulate cellular processes, paving ways …
information and represents a recent strategy to manipulate cellular processes, paving ways …
DNA phosphorothioate modification—a new multi-functional epigenetic system in bacteria
L Wang, S Jiang, Z Deng, PC Dedon… - FEMS microbiology …, 2019 - academic.oup.com
Synthetic phosphorothioate (PT) internucleotide linkages, in which a nonbridging oxygen is
replaced by a sulphur atom, share similar physical and chemical properties with …
replaced by a sulphur atom, share similar physical and chemical properties with …
Understanding base and backbone contributions of phosphorothioate DNA for molecular recognition with SBD proteins
Bacterial DNA phosphorothioate (PT) modification provides a specific anchoring site for
sulfur-binding proteins (SBDs). Besides, their recognition patterns include phosphate links …
sulfur-binding proteins (SBDs). Besides, their recognition patterns include phosphate links …
[HTML][HTML] Biased genome editing using the local accumulation of DSB repair molecules system
Selective genome editing such as gene knock-in has recently been achieved by
administration of chemical enhancer or inhibitor of particular DNA double-strand break …
administration of chemical enhancer or inhibitor of particular DNA double-strand break …
Critical review on engineering deaminases for site-directed RNA editing
P Vogel, T Stafforst - Current opinion in biotechnology, 2019 - Elsevier
Highlights•RNA editing is an attractive, complementing alternative to gene editing.•Several
RNA-guided editases have been engineered all suffering from off-targets.•dCas13-based …
RNA-guided editases have been engineered all suffering from off-targets.•dCas13-based …
[HTML][HTML] Structural basis for the recognition of sulfur in phosphorothioated DNA
G Liu, W Fu, Z Zhang, Y He, H Yu, Y Wang… - Nature …, 2018 - nature.com
There have been very few reports on protein domains that specifically recognize sulfur. Here
we present the crystal structure of the sulfur-binding domain (SBD) from the DNA …
we present the crystal structure of the sulfur-binding domain (SBD) from the DNA …