[HTML][HTML] A survey of computational methods in transcriptome-wide alternative splicing analysis
Alternative splicing is widely recognized for its roles in regulating genes and creating gene
diversity. Consequently the identification and quantification of differentially spliced …
diversity. Consequently the identification and quantification of differentially spliced …
Selecting Differential Splicing Methods: Practical Considerations
BJ Draper, MJ Dunning, DC James - arXiv preprint arXiv:2409.05458, 2024 - arxiv.org
Alternative splicing is crucial in gene regulation, with significant implications in clinical
settings and biotechnology. This review article compiles bioinformatics RNA-seq tools for …
settings and biotechnology. This review article compiles bioinformatics RNA-seq tools for …
[HTML][HTML] Splicing Express: a software suite for alternative splicing analysis using next-generation sequencing data
Motivation. Alternative splicing events (ASEs) are prevalent in the transcriptome of
eukaryotic species and are known to influence many biological phenomena. The …
eukaryotic species and are known to influence many biological phenomena. The …
[HTML][HTML] Integrative analysis of many RNA-seq datasets to study alternative splicing
Alternative splicing is an important gene regulatory mechanism that dramatically increases
the complexity of the proteome. However, how alternative splicing is regulated and how …
the complexity of the proteome. However, how alternative splicing is regulated and how …
[HTML][HTML] A survey of software for genome-wide discovery of differential splicing in RNA-Seq data
JE Hooper - Human genomics, 2014 - Springer
Alternative splicing is a major contributor to cellular diversity. Therefore the identification and
quantification of differentially spliced transcripts in genome-wide transcript analysis is an …
quantification of differentially spliced transcripts in genome-wide transcript analysis is an …
Leveraging transcript quantification for fast computation of alternative splicing profiles
GP Alamancos, A Pagès, JL Trincado, N Bellora… - Rna, 2015 - rnajournal.cshlp.org
Alternative splicing plays an essential role in many cellular processes and bears major
relevance in the understanding of multiple diseases, including cancer. High-throughput RNA …
relevance in the understanding of multiple diseases, including cancer. High-throughput RNA …
A comprehensive benchmarking of differential splicing tools for RNA-seq analysis at the event level
M Jiang, S Zhang, H Yin, Z Zhuo… - Briefings in …, 2023 - academic.oup.com
RNA alternative splicing, a post-transcriptional stage in eukaryotes, is crucial in cellular
homeostasis and disease processes. Due to the rapid development of the next-generation …
homeostasis and disease processes. Due to the rapid development of the next-generation …
[HTML][HTML] Detection, annotation and visualization of alternative splicing from RNA-Seq data with SplicingViewer
Alternative splicing is a crucial mechanism by which diverse gene products can be
generated from a limited number of genes, and is thought to be involved in complex …
generated from a limited number of genes, and is thought to be involved in complex …
ASpli: integrative analysis of splicing landscapes through RNA-Seq assays
E Mancini, A Rabinovich, J Iserte, M Yanovsky… - …, 2021 - academic.oup.com
Motivation Genome-wide analysis of alternative splicing has been a very active field of
research since the early days of next generation sequencing technologies. Since then, ever …
research since the early days of next generation sequencing technologies. Since then, ever …
rMATS-turbo: an efficient and flexible computational tool for alternative splicing analysis of large-scale RNA-seq data
Pre-mRNA alternative splicing is a prevalent mechanism for diversifying eukaryotic
transcriptomes and proteomes. Regulated alternative splicing plays a role in many …
transcriptomes and proteomes. Regulated alternative splicing plays a role in many …