OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversity
D Kuznetsov, F Tegenfeldt, M Manni… - Nucleic Acids …, 2023 - academic.oup.com
OrthoDB provides evolutionary and functional annotations of genes in a diverse sampling of
eukaryotes, prokaryotes, and viruses. Genomics continues to accelerate our exploration of …
eukaryotes, prokaryotes, and viruses. Genomics continues to accelerate our exploration of …
OrthoDB in 2020: evolutionary and functional annotations of orthologs
EM Zdobnov, D Kuznetsov, F Tegenfeldt… - Nucleic acids …, 2021 - academic.oup.com
OrthoDB provides evolutionary and functional annotations of orthologs, inferred for a vast
number of available organisms. OrthoDB is leading in the coverage and genomic diversity …
number of available organisms. OrthoDB is leading in the coverage and genomic diversity …
OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs
EV Kriventseva, D Kuznetsov, F Tegenfeldt… - Nucleic acids …, 2019 - academic.oup.com
Abstract OrthoDB (https://www. orthodb. org) provides evolutionary and functional
annotations of orthologs. This update features a major scaling up of the resource coverage …
annotations of orthologs. This update features a major scaling up of the resource coverage …
OrthoDB v9. 1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs
EM Zdobnov, F Tegenfeldt, D Kuznetsov… - Nucleic acids …, 2017 - academic.oup.com
OrthoDB is a comprehensive catalog of orthologs, genes inherited by extant species from a
single gene in their last common ancestor. In 2016 OrthoDB reached its 9th release, growing …
single gene in their last common ancestor. In 2016 OrthoDB reached its 9th release, growing …
OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software
Orthology, refining the concept of homology, is the cornerstone of evolutionary comparative
studies. With the ever-increasing availability of genomic data, inference of orthology has …
studies. With the ever-increasing availability of genomic data, inference of orthology has …
OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis
Prediction of orthologs (homologous genes that diverged because of speciation) is an
integral component of many comparative genomics methods. Although orthologs are more …
integral component of many comparative genomics methods. Although orthologs are more …
The Quest for Orthologs benchmark service and consensus calls in 2020
AM Altenhoff, J Garrayo-Ventas… - Nucleic acids …, 2020 - academic.oup.com
The identification of orthologs—genes in different species which descended from the same
gene in their last common ancestor—is a prerequisite for many analyses in comparative …
gene in their last common ancestor—is a prerequisite for many analyses in comparative …
OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011
The concept of homology drives speculation on a gene's function in any given species when
its biological roles in other species are characterized. With reference to a specific species …
its biological roles in other species are characterized. With reference to a specific species …
OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs
RM Waterhouse, F Tegenfeldt, J Li… - Nucleic acids …, 2013 - academic.oup.com
The concept of orthology provides a foundation for formulating hypotheses on gene and
genome evolution, and thus forms the cornerstone of comparative genomics, phylogenomics …
genome evolution, and thus forms the cornerstone of comparative genomics, phylogenomics …
OrthoDB: the hierarchical catalog of eukaryotic orthologs
EV Kriventseva, N Rahman, O Espinosa… - Nucleic acids …, 2007 - academic.oup.com
The concept of orthology is widely used to relate genes across different species using
comparative genomics, and it provides the basis for inferring gene function. Here we present …
comparative genomics, and it provides the basis for inferring gene function. Here we present …