OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversity

D Kuznetsov, F Tegenfeldt, M Manni… - Nucleic Acids …, 2023 - academic.oup.com
OrthoDB provides evolutionary and functional annotations of genes in a diverse sampling of
eukaryotes, prokaryotes, and viruses. Genomics continues to accelerate our exploration of …

OrthoDB in 2020: evolutionary and functional annotations of orthologs

EM Zdobnov, D Kuznetsov, F Tegenfeldt… - Nucleic acids …, 2021 - academic.oup.com
OrthoDB provides evolutionary and functional annotations of orthologs, inferred for a vast
number of available organisms. OrthoDB is leading in the coverage and genomic diversity …

OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs

EV Kriventseva, D Kuznetsov, F Tegenfeldt… - Nucleic acids …, 2019 - academic.oup.com
Abstract OrthoDB (https://www. orthodb. org) provides evolutionary and functional
annotations of orthologs. This update features a major scaling up of the resource coverage …

OrthoDB v9. 1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs

EM Zdobnov, F Tegenfeldt, D Kuznetsov… - Nucleic acids …, 2017 - academic.oup.com
OrthoDB is a comprehensive catalog of orthologs, genes inherited by extant species from a
single gene in their last common ancestor. In 2016 OrthoDB reached its 9th release, growing …

OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software

EV Kriventseva, F Tegenfeldt, TJ Petty… - Nucleic acids …, 2015 - academic.oup.com
Orthology, refining the concept of homology, is the cornerstone of evolutionary comparative
studies. With the ever-increasing availability of genomic data, inference of orthology has …

OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis

MD Whiteside, GL Winsor, MR Laird… - Nucleic acids …, 2013 - academic.oup.com
Prediction of orthologs (homologous genes that diverged because of speciation) is an
integral component of many comparative genomics methods. Although orthologs are more …

The Quest for Orthologs benchmark service and consensus calls in 2020

AM Altenhoff, J Garrayo-Ventas… - Nucleic acids …, 2020 - academic.oup.com
The identification of orthologs—genes in different species which descended from the same
gene in their last common ancestor—is a prerequisite for many analyses in comparative …

OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011

RM Waterhouse, EM Zdobnov, F Tegenfeldt… - Nucleic acids …, 2011 - academic.oup.com
The concept of homology drives speculation on a gene's function in any given species when
its biological roles in other species are characterized. With reference to a specific species …

OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs

RM Waterhouse, F Tegenfeldt, J Li… - Nucleic acids …, 2013 - academic.oup.com
The concept of orthology provides a foundation for formulating hypotheses on gene and
genome evolution, and thus forms the cornerstone of comparative genomics, phylogenomics …

OrthoDB: the hierarchical catalog of eukaryotic orthologs

EV Kriventseva, N Rahman, O Espinosa… - Nucleic acids …, 2007 - academic.oup.com
The concept of orthology is widely used to relate genes across different species using
comparative genomics, and it provides the basis for inferring gene function. Here we present …