Uncovering cancer vulnerabilities by machine learning prediction of synthetic lethality

S Benfatto, Ö Serçin, FR Dejure, A Abdollahi… - Molecular Cancer, 2021 - Springer
Background Synthetic lethality describes a genetic interaction between two perturbations,
leading to cell death, whereas neither event alone has a significant effect on cell viability …

Pathway-driven analysis of synthetic lethal interactions in cancer using perturbation screens

M Karimpour, M Totonchi, M Behmanesh… - Life Science …, 2024 - life-science-alliance.org
Synthetic lethality offers a promising approach for developing effective therapeutic
interventions in cancer when direct targeting of driver genes is impractical. In this study, we …

Coessentiality and cofunctionality: a network approach to learning genetic vulnerabilities from cancer cell line fitness screens

T Hart, C Koh, J Moffat - BioRxiv, 2017 - biorxiv.org
Genetic interaction networks are a powerful approach for functional genomics, and the
synthetic lethal interactions that comprise these networks offer a compelling strategy for …

Genome-wide CRISPR screens using isogenic cells reveal vulnerabilities conferred by loss of tumor suppressors

X Feng, M Tang, M Dede, D Su, G Pei, D Jiang… - Science …, 2022 - science.org
Exploiting cancer vulnerabilities is critical for the discovery of anticancer drugs. However,
tumor suppressors cannot be directly targeted because of their loss of function. To uncover …

SL-scan identifies synthetic lethal interactions in cancer using metabolic networks

E Zangene, SA Marashi, H Montazeri - Scientific Reports, 2023 - nature.com
Exploiting synthetic lethality is a promising strategy for developing targeted cancer
therapies. However, identifying clinically significant synthetic lethal (SL) interactions among …

Comprehensive prediction of robust synthetic lethality between paralog pairs in cancer cell lines

B De Kegel, N Quinn, NA Thompson, DJ Adams… - Cell Systems, 2021 - cell.com
Pairs of paralogs may share common functionality and, hence, display synthetic lethal
interactions. As the majority of human genes have an identifiable paralog, exploiting …

Identifying lethal dependencies with HUGE predictive power

M Gimeno, E San José-Enériz, A Rubio, L Garate… - Cancers, 2022 - mdpi.com
Simple Summary This work shows that the predictions of lethal dependencies (LEDs)
between genes can be dramatically improved by incorporating the “HUb effect in Genetic …

Predicting cancer-specific vulnerability via data-driven detection of synthetic lethality

L Jerby-Arnon, N Pfetzer, YY Waldman, L McGarry… - Cell, 2014 - cell.com
Synthetic lethality occurs when the inhibition of two genes is lethal while the inhibition of
each single gene is not. It can be harnessed to selectively treat cancer by identifying inactive …

SL-BioDP: multi-cancer interactive tool for prediction of synthetic lethality and response to cancer treatment

X Deng, S Das, K Valdez, K Camphausen… - Cancers, 2019 - mdpi.com
Synthetic lethality exploits the phenomenon that a mutation in a cancer gene is often
associated with new vulnerability which can be uniquely targeted therapeutically, leading to …

Partial gene suppression improves identification of cancer vulnerabilities when CRISPR-Cas9 knockout is pan-lethal

JM Krill-Burger, JM Dempster, AA Borah, BR Paolella… - Genome Biology, 2023 - Springer
Background Hundreds of functional genomic screens have been performed across a diverse
set of cancer contexts, as part of efforts such as the Cancer Dependency Map, to identify …