ECO: the Evidence and Conclusion Ontology, an update for 2022

S Nadendla, R Jackson, J Munro… - Nucleic Acids …, 2022 - academic.oup.com
Abstract The Evidence and Conclusion Ontology (ECO) is a community resource that
provides an ontology of terms used to capture the type of evidence that supports biomedical …

ECO, the Evidence & Conclusion Ontology: community standard for evidence information

M Giglio, R Tauber, S Nadendla, J Munro… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Evidence and Conclusion Ontology (ECO) contains terms (classes) that
describe types of evidence and assertion methods. ECO terms are used in the process of …

[HTML][HTML] Standardized description of scientific evidence using the Evidence Ontology (ECO)

MC Chibucos, CJ Mungall, R Balakrishnan… - Database, 2014 - academic.oup.com
The Evidence Ontology (ECO) is a structured, controlled vocabulary for capturing evidence
in biological research. ECO includes diverse terms for categorizing evidence that supports …

[PDF][PDF] The evidence and conclusion ontology (ECO): supporting GO annotations

MC Chibucos, DA Siegele, JC Hu… - The gene ontology …, 2017 - library.oapen.org
Abstract The Evidence and Conclusion Ontology (ECO) is a community resource for
describing the various types of evidence that are generated during the course of a scientific …

[PDF][PDF] SEPIO: A Semantic Model for the Integration and Analysis of Scientific Evidence.

MH Brush, KA Shefchek, MA Haendel - ICBO/BioCreative, 2016 - ceur-ws.org
Information Ontology (SEPIO) was developed to support the description of evidence and
provenance information for scientific claims. The core model represents the relationships …

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies

R Jackson, N Matentzoglu, JA Overton, R Vita… - Database, 2021 - academic.oup.com
Biological ontologies are used to organize, curate and interpret the vast quantities of data
arising from biological experiments. While this works well when using a single ontology …

The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations

FB Bastian, MC Chibucos, P Gaudet, M Giglio… - Database, 2015 - academic.oup.com
Biocuration has become a cornerstone for analyses in biology, and to meet needs, the
amount of annotations has considerably grown in recent years. However, the reliability of …

Formal axioms in biomedical ontologies improve analysis and interpretation of associated data

FZ Smaili, X Gao, R Hoehndorf - Bioinformatics, 2020 - academic.oup.com
Motivation Over the past years, significant resources have been invested into formalizing
biomedical ontologies. Formal axioms in ontologies have been developed and used to …

The Gene Ontology resource: enriching a GOld mine

Nucleic acids research, 2021 - academic.oup.com
Abstract The Gene Ontology Consortium (GOC) provides the most comprehensive resource
currently available for computable knowledge regarding the functions of genes and gene …

[HTML][HTML] STOP using just GO: a multi-ontology hypothesis generation tool for high throughput experimentation

T Wittkop, E TerAvest, US Evani, KM Fleisch… - BMC …, 2013 - Springer
Abstract Background Gene Ontology (GO) enrichment analysis remains one of the most
common methods for hypothesis generation from high throughput datasets. However, we …