A free-energy landscape for coupled folding and binding of an intrinsically disordered protein in explicit solvent from detailed all-atom computations
J Higo, Y Nishimura, H Nakamura - Journal of the American …, 2011 - ACS Publications
The N-terminal repressor domain of neural restrictive silencer factor (NRSF) is an
intrinsically disordered protein (IDP) that binds to the paired amphipathic helix (PAH) …
intrinsically disordered protein (IDP) that binds to the paired amphipathic helix (PAH) …
Energetic basis of uncoupling folding from binding for an intrinsically disordered protein
I Drobnak, N De Jonge, S Haesaerts… - Journal of the …, 2013 - ACS Publications
Intrinsically disordered proteins (IDPs) are proteins that lack a unique three-dimensional
structure in their native state. Many have, however, been found to fold into a defined …
structure in their native state. Many have, however, been found to fold into a defined …
Controlling structural bias in intrinsically disordered proteins using solution space scanning
AS Holehouse, S Sukenik - Journal of Chemical Theory and …, 2020 - ACS Publications
Intrinsically disordered proteins or regions (IDRs) differ from their well-folded counterparts by
lacking a stable tertiary state. Instead, IDRs exist in an ensemble of conformations and often …
lacking a stable tertiary state. Instead, IDRs exist in an ensemble of conformations and often …
[HTML][HTML] Residual structures, conformational fluctuations, and electrostatic interactions in the synergistic folding of two intrinsically disordered proteins
To understand the interplay of residual structures and conformational fluctuations in the
interaction of intrinsically disordered proteins (IDPs), we first combined implicit solvent and …
interaction of intrinsically disordered proteins (IDPs), we first combined implicit solvent and …
Accelerating the conformational sampling of intrinsically disordered proteins
TN Do, WY Choy, M Karttunen - Journal of Chemical Theory and …, 2014 - ACS Publications
Intrinsically disordered proteins (IDPs) are a class of proteins lacking a well-defined
secondary structure. Instead, they are able to attain multiple conformations, bind to multiple …
secondary structure. Instead, they are able to attain multiple conformations, bind to multiple …
Mechanism of coupled folding-upon-binding of an intrinsically disordered protein
Intrinsically disordered proteins (IDPs), which in isolation do not adopt a well-defined tertiary
structure but instead populate a structurally heterogeneous ensemble of interconverting …
structure but instead populate a structurally heterogeneous ensemble of interconverting …
The binding mechanisms of intrinsically disordered proteins
J Dogan, S Gianni, P Jemth - Physical Chemistry Chemical Physics, 2014 - pubs.rsc.org
Intrinsically disordered proteins (IDPs) and intrinsically disordered regions (IDRs) of proteins
are very common and instrumental for cellular signaling. Recently, a number of studies have …
are very common and instrumental for cellular signaling. Recently, a number of studies have …
Balanced solvent model for intrinsically disordered and ordered proteins
J Mu, Z Pan, HF Chen - Journal of Chemical Information and …, 2021 - ACS Publications
Intrinsically disordered proteins (IDPs) have no fixed three-dimensional (3D) structures
under physiological conditions, with the content being about 51% in human proteomics …
under physiological conditions, with the content being about 51% in human proteomics …
[HTML][HTML] Recent advances in computational protocols addressing intrinsically disordered proteins
S Bhattacharya, X Lin - Biomolecules, 2019 - mdpi.com
Intrinsically disordered proteins (IDP) are abundant in the human genome and have recently
emerged as major therapeutic targets for various diseases. Unlike traditional proteins that …
emerged as major therapeutic targets for various diseases. Unlike traditional proteins that …
Conformational preferences of an intrinsically disordered protein domain: A case study for modern force fields
SM Gopal, S Wingbermühle… - The Journal of …, 2020 - ACS Publications
Molecular simulations of intrinsically disordered proteins (IDPs) are challenging because
they require sampling a very large number of relevant conformations, corresponding to a …
they require sampling a very large number of relevant conformations, corresponding to a …