[HTML][HTML] StructureMan: A structure manipulation tool to study large scale biomolecular interactions
Studying biomolecular interactions is a crucial but challenging task. Due to their large
scales, many biomolecular interactions are difficult to be simulated via all atom models. An …
scales, many biomolecular interactions are difficult to be simulated via all atom models. An …
The LightDock Server: Artificial Intelligence-powered modeling of macromolecular interactions
B Jiménez-García, J Roel-Touris… - Nucleic Acids …, 2023 - academic.oup.com
Computational docking is an instrumental method of the structural biology toolbox.
Specifically, integrative modeling software, such as LightDock, arise as complementary and …
Specifically, integrative modeling software, such as LightDock, arise as complementary and …
[HTML][HTML] Information-driven modeling of biomolecular complexes
Proteins play crucial roles in every cellular process by interacting with each other, nucleic
acids, metabolites, and other molecules. The resulting assemblies can be very large and …
acids, metabolites, and other molecules. The resulting assemblies can be very large and …
[HTML][HTML] Experiments and simulations: a pas de deux to unravel biological function
Understanding the molecular mechanisms used by biological systems to perform their
functions is often essential to rationally target associated diseases. In many cases, the …
functions is often essential to rationally target associated diseases. In many cases, the …
An overview of recent advances in structural bioinformatics of protein–protein interactions and a guide to their principles
G Sudha, R Nussinov, N Srinivasan - Progress in biophysics and molecular …, 2014 - Elsevier
Rich data bearing on the structural and evolutionary principles of protein–protein
interactions are paving the way to a better understanding of the regulation of function in the …
interactions are paving the way to a better understanding of the regulation of function in the …
A structural perspective on protein–protein interactions
Structures of macromolecular complexes are necessary for a mechanistic description of
biochemical and cellular processes. They can be solved by experimental methods, such as …
biochemical and cellular processes. They can be solved by experimental methods, such as …
Structural prediction of protein–protein interactions by docking: Application to biomedical problems
D Barradas-Bautista, M Rosell, C Pallara… - Advances in protein …, 2018 - Elsevier
A huge amount of genetic information is available thanks to the recent advances in
sequencing technologies and the larger computational capabilities, but the interpretation of …
sequencing technologies and the larger computational capabilities, but the interpretation of …
[HTML][HTML] The HADDOCK2. 2 web server: user-friendly integrative modeling of biomolecular complexes
The prediction of the quaternary structure of biomolecular macromolecules is of paramount
importance for fundamental understanding of cellular processes and drug design. In the era …
importance for fundamental understanding of cellular processes and drug design. In the era …
[HTML][HTML] Identifying and visualizing macromolecular flexibility in structural biology
M Palamini, A Canciani, F Forneris - Frontiers in molecular …, 2016 - frontiersin.org
Structural biology comprises a variety of tools to obtain atomic resolution data for the
investigation of macromolecules. Conventional structural methodologies including …
investigation of macromolecules. Conventional structural methodologies including …
Multiscale Structural and Biophysical Studies of Protein-Compound Interactions
SJ Trudeau - 2024 - academiccommons.columbia.edu
The recognition of small organic compounds and metabolites is essential for living systems,
enabling the cell to sense environmental stimuli and respond appropriately. Developing …
enabling the cell to sense environmental stimuli and respond appropriately. Developing …