Proteomic prediction of disease outcome in cancer: clinical framework and current status

R Steinert, P Von Hoegen, LM Fels, K Günther… - American Journal of …, 2003 - Springer
Better than gene sequencing or quantitative amplification, proteomics tools allow the study
of tumor phenotype. Indeed, most current prognostic tests in cancer (carcinoembryonary …

Iterative bayesian model averaging: A method for the application of survival analysis to high-dimensional microarray data

A Annest, RE Bumgarner, AE Raftery, KY Yeung - BMC bioinformatics, 2009 - Springer
Background Microarray technology is increasingly used to identify potential biomarkers for
cancer prognostics and diagnostics. Previously, we have developed the iterative Bayesian …

CAERUS: predicting CAncER oUtcomeS using relationship between protein structural information, protein networks, gene expression data, and mutation data

KX Zhang, BFF Ouellette - PLoS computational biology, 2011 - journals.plos.org
Carcinogenesis is a complex process with multiple genetic and environmental factors
contributing to the development of one or more tumors. Understanding the underlying …

Machine learning techniques in cancer prognostic modeling and performance assessment

Y Chen, JA Millar - Frontiers of biostatistical methods and applications in …, 2017 - Springer
Prognostic models for disease occurrence, tumor progression and survival are abundant for
most types of cancers. Physicians and cancer patients are utilizing these models to make …

Gene expression based survival prediction for cancer patients—A topic modeling approach

L Kumar, R Greiner - PloS one, 2019 - journals.plos.org
Cancer is one of the leading cause of death, worldwide. Many believe that genomic data will
enable us to better predict the survival time of these patients, which will lead to better, more …

CAncer bioMarker Prediction Pipeline (CAMPP)—A standardized framework for the analysis of quantitative biological data

T Terkelsen, A Krogh, E Papaleo - PLoS computational biology, 2020 - journals.plos.org
With the improvement of-omics and next-generation sequencing (NGS) methodologies,
along with the lowered cost of generating these types of data, the analysis of high …

Pan-cancer application of a lung-adenocarcinoma-derived gene-expression-based prognostic predictor

DF Nacer, H Liljedahl, A Karlsson… - Briefings in …, 2021 - academic.oup.com
Gene-expression profiling can be used to classify human tumors into molecular subtypes or
risk groups, representing potential future clinical tools for treatment prediction and …

Construction and validation of a prognostic risk model for breast cancer based on protein expression

B Huang, X Zhang, Q Cao, J Chen, C Lin, T Xiang… - BMC Medical …, 2022 - Springer
Breast cancer (BRCA) is the primary cause of mortality among females globally. The
combination of advanced genomic analysis with proteomics characterization to construct a …

Joint learning improves protein abundance prediction in cancers

H Li, O Siddiqui, H Zhang, Y Guan - BMC biology, 2019 - Springer
Background The classic central dogma in biology is the information flow from DNA to mRNA
to protein, yet complicated regulatory mechanisms underlying protein translation often lead …

Survival prediction using gene expression data: a review and comparison

WN Van Wieringen, D Kun, R Hampel… - Computational statistics & …, 2009 - Elsevier
Knowledge of transcription of the human genome might greatly enhance our understanding
of cancer. In particular, gene expression may be used to predict the survival of cancer …