Graph convolutional neural networks for predicting drug-target interactions
Accurate determination of target-ligand interactions is crucial in the drug discovery process.
In this paper, we propose a graph-convolutional (Graph-CNN) framework for predicting …
In this paper, we propose a graph-convolutional (Graph-CNN) framework for predicting …
Predicting drug–target interaction using a novel graph neural network with 3D structure-embedded graph representation
We propose a novel deep learning approach for predicting drug–target interaction using a
graph neural network. We introduce a distance-aware graph attention algorithm to …
graph neural network. We introduce a distance-aware graph attention algorithm to …
Interactiongraphnet: A novel and efficient deep graph representation learning framework for accurate protein–ligand interaction predictions
Accurate quantification of protein–ligand interactions remains a key challenge to structure-
based drug design. However, traditional machine learning (ML)-based methods based on …
based drug design. However, traditional machine learning (ML)-based methods based on …
Improved protein–ligand binding affinity prediction with structure-based deep fusion inference
Predicting accurate protein–ligand binding affinities is an important task in drug discovery
but remains a challenge even with computationally expensive biophysics-based energy …
but remains a challenge even with computationally expensive biophysics-based energy …
GraphscoreDTA: optimized graph neural network for protein–ligand binding affinity prediction
Motivation Computational approaches for identifying the protein–ligand binding affinity can
greatly facilitate drug discovery and development. At present, many deep learning-based …
greatly facilitate drug discovery and development. At present, many deep learning-based …
[HTML][HTML] Development of a graph convolutional neural network model for efficient prediction of protein-ligand binding affinities
J Son, D Kim - PloS one, 2021 - journals.plos.org
Prediction of protein-ligand interactions is a critical step during the initial phase of drug
discovery. We propose a novel deep-learning-based prediction model based on a graph …
discovery. We propose a novel deep-learning-based prediction model based on a graph …
Predicting drug-target interactions via dual-stream graph neural network
Y Li, W Liang, L Peng, D Zhang… - … /ACM Transactions on …, 2022 - ieeexplore.ieee.org
Drug target interaction prediction is a crucial stage in drug discovery. However, brute-force
search over a compound database is financially infeasible. We have witnessed the …
search over a compound database is financially infeasible. We have witnessed the …
Structure-aware interactive graph neural networks for the prediction of protein-ligand binding affinity
Drug discovery often relies on the successful prediction of protein-ligand binding affinity.
Recent advances have shown great promise in applying graph neural networks (GNNs) for …
Recent advances have shown great promise in applying graph neural networks (GNNs) for …
Three-dimensional convolutional neural networks and a cross-docked data set for structure-based drug design
PG Francoeur, T Masuda, J Sunseri, A Jia… - Journal of chemical …, 2020 - ACS Publications
One of the main challenges in drug discovery is predicting protein–ligand binding affinity.
Recently, machine learning approaches have made substantial progress on this task …
Recently, machine learning approaches have made substantial progress on this task …
[HTML][HTML] Layer-wise relevance propagation of InteractionNet explains protein–ligand interactions at the atom level
H Cho, EK Lee, IS Choi - Scientific reports, 2020 - nature.com
Abstract Development of deep-learning models for intermolecular noncovalent (NC)
interactions between proteins and ligands has great potential in the chemical and …
interactions between proteins and ligands has great potential in the chemical and …