Selective sweeps under dominance and inbreeding

M Hartfield, T Bataillon - G3: Genes, Genomes, Genetics, 2020 - academic.oup.com
A major research goal in evolutionary genetics is to uncover loci experiencing positive
selection. One approach involves finding 'selective sweeps' patterns, which can either be …

Inference of selective sweep parameters through supervised learning

IV Caldas, AG Clark, PW Messer - bioRxiv, 2022 - biorxiv.org
A selective sweep occurs when positive selection drives an initially rare allele to high
population frequency. In nature, the precise parameters of a sweep are seldom known: How …

Soft shoulders ahead: spurious signatures of soft and partial selective sweeps result from linked hard sweeps

DR Schrider, FK Mendes, MW Hahn, AD Kern - Genetics, 2015 - academic.oup.com
Characterizing the nature of the adaptive process at the genetic level is a central goal for
population genetics. In particular, we know little about the sources of adaptive substitution or …

Selective sweeps

W Stephan - Genetics, 2019 - academic.oup.com
For almost 20 years, many inference methods have been developed to detect selective
sweeps and localize the targets of directional selection in the genome. These methods are …

Genetic signatures of evolutionary rescue by a selective sweep

MM Osmond, G Coop - Genetics, 2020 - academic.oup.com
Inferring selective sweeps from genetic data has been a breakthrough in population
genetics. The most prominent examples come from populations suddenly exposed to …

Background selection does not mimic the patterns of genetic diversity produced by selective sweeps

DR Schrider - Genetics, 2020 - academic.oup.com
It is increasingly evident that natural selection plays a prominent role in shaping patterns of
diversity across the genome. The most commonly studied modes of natural selection are …

Fixation times of de novo and standing beneficial variants in subdivided populations

V Sudbrack, C Mullon - Genetics, 2024 - academic.oup.com
The rate at which beneficial alleles fix in a population depends on the probability of and time
to fixation of such alleles. Both of these quantities can be significantly impacted by …

Strong neutral sweeps occurring during a population contraction

A Moinet, F Schlichta, S Peischl, L Excoffier - Genetics, 2022 - academic.oup.com
A strong reduction in diversity around a specific locus is often interpreted as a recent rapid
fixation of a positively selected allele, a phenomenon called a selective sweep. Rapid …

Estimating the strength of selective sweeps from deep population diversity data

PW Messer, RA Neher - Genetics, 2012 - academic.oup.com
Selective sweeps are typically associated with a local reduction of genetic diversity around
the adaptive site. However, selective sweeps can also quickly carry neutral mutations to …

Genetic diversity and the structure of genealogies in rapidly adapting populations

MM Desai, AM Walczak, DS Fisher - Genetics, 2013 - academic.oup.com
Positive selection distorts the structure of genealogies and hence alters patterns of genetic
variation within a population. Most analyses of these distortions focus on the signatures of …