Improving predictions of solvation free energies from non-polarisable models by applying polarisation corrections

MC Barrera - 2021 - stax.strath.ac.uk
Classical non-polarisable models, normally based on a combination of Lennard-Jones (LJ)
sites and point charges, are extensively used to model thermodynamic properties of fluids …

A polarization-consistent model for alcohols to predict solvation free energies

MC Barrera, M Jorge - Journal of Chemical Information and …, 2020 - ACS Publications
Classical nonpolarizable models, normally based on a combination of Lennard-Jones sites
and point charges, are extensively used to model thermodynamic properties of fluids …

Comparison of RESP and IPolQ-mod partial charges for solvation free energy calculations of various solute/solvent pairs

A Mecklenfeld, G Raabe - Journal of chemical theory and …, 2017 - ACS Publications
The calculation of solvation free energies Δ G solv by molecular simulations is of great
interest as they are linked to other physical properties such as relative solubility, partition …

[HTML][HTML] Polarization-consistent force field for ketones

MC Barrera, J Cree, JRB Gomes, M Jorge - Journal of Molecular Liquids, 2023 - Elsevier
Ketones are some of the most widely used solvents, with a variety of applications. In
addition, molecules with ketone functional groups feature prominently in pharmaceutical …

[HTML][HTML] Automatic parametrization of non-polar implicit solvent models for the blind prediction of solvation free energies

B Wang, Z Zhao, GW Wei - The Journal of chemical physics, 2016 - pubs.aip.org
In this work, a systematic protocol is proposed to automatically parametrize the non-polar
part of implicit solvent models with polar and non-polar components. The proposed protocol …

Surveying implicit solvent models for estimating small molecule absolute hydration free energies

JL Knight, CL Brooks III - Journal of computational chemistry, 2011 - Wiley Online Library
Implicit solvent models are powerful tools in accounting for the aqueous environment at a
fraction of the computational expense of explicit solvent representations. Here, we compare …

Calculation of the free energy of polarization: Quantifying the effect of explicitly treating electronic polarization on the transferability of force-field parameters

DP Geerke, WF van Gunsteren - The Journal of Physical …, 2007 - ACS Publications
The lack of an explicit description of electronic polarization in nonpolarizable force fields
usually results in an incomplete transferability of force-field parameter sets when applied in …

Effective potentials for liquid water using polarizable and nonpolarizable models

A Wallqvist, BJ Berne - The Journal of Physical Chemistry, 1993 - ACS Publications
The study of liquid water systems using computer simulations and molecular models of
water continues to be of great interest due to the ubiquitous nature of water. 1-3 Even with …

Breaking the polar‐nonpolar division in solvation free energy prediction

B Wang, C Wang, K Wu, GW Wei - Journal of computational …, 2018 - Wiley Online Library
Implicit solvent models divide solvation free energies into polar and nonpolar additive
contributions, whereas polar and nonpolar interactions are inseparable and nonadditive. We …

Predictions of hydration free energies from continuum solvent with solute polarizable models: the SAMPL2 blind challenge

A Meunier, JF Truchon - Journal of computer-aided molecular design, 2010 - Springer
This paper reports the results of our attempt to predict hydration free energies on the
SAMPL2 blind challenge dataset. We mostly examine the effects of the solute electrostatic …