Improving predictions of solvation free energies from non-polarisable models by applying polarisation corrections
MC Barrera - 2021 - stax.strath.ac.uk
Classical non-polarisable models, normally based on a combination of Lennard-Jones (LJ)
sites and point charges, are extensively used to model thermodynamic properties of fluids …
sites and point charges, are extensively used to model thermodynamic properties of fluids …
A polarization-consistent model for alcohols to predict solvation free energies
MC Barrera, M Jorge - Journal of Chemical Information and …, 2020 - ACS Publications
Classical nonpolarizable models, normally based on a combination of Lennard-Jones sites
and point charges, are extensively used to model thermodynamic properties of fluids …
and point charges, are extensively used to model thermodynamic properties of fluids …
Comparison of RESP and IPolQ-mod partial charges for solvation free energy calculations of various solute/solvent pairs
A Mecklenfeld, G Raabe - Journal of chemical theory and …, 2017 - ACS Publications
The calculation of solvation free energies Δ G solv by molecular simulations is of great
interest as they are linked to other physical properties such as relative solubility, partition …
interest as they are linked to other physical properties such as relative solubility, partition …
[HTML][HTML] Polarization-consistent force field for ketones
MC Barrera, J Cree, JRB Gomes, M Jorge - Journal of Molecular Liquids, 2023 - Elsevier
Ketones are some of the most widely used solvents, with a variety of applications. In
addition, molecules with ketone functional groups feature prominently in pharmaceutical …
addition, molecules with ketone functional groups feature prominently in pharmaceutical …
[HTML][HTML] Automatic parametrization of non-polar implicit solvent models for the blind prediction of solvation free energies
In this work, a systematic protocol is proposed to automatically parametrize the non-polar
part of implicit solvent models with polar and non-polar components. The proposed protocol …
part of implicit solvent models with polar and non-polar components. The proposed protocol …
Surveying implicit solvent models for estimating small molecule absolute hydration free energies
JL Knight, CL Brooks III - Journal of computational chemistry, 2011 - Wiley Online Library
Implicit solvent models are powerful tools in accounting for the aqueous environment at a
fraction of the computational expense of explicit solvent representations. Here, we compare …
fraction of the computational expense of explicit solvent representations. Here, we compare …
Calculation of the free energy of polarization: Quantifying the effect of explicitly treating electronic polarization on the transferability of force-field parameters
DP Geerke, WF van Gunsteren - The Journal of Physical …, 2007 - ACS Publications
The lack of an explicit description of electronic polarization in nonpolarizable force fields
usually results in an incomplete transferability of force-field parameter sets when applied in …
usually results in an incomplete transferability of force-field parameter sets when applied in …
Effective potentials for liquid water using polarizable and nonpolarizable models
A Wallqvist, BJ Berne - The Journal of Physical Chemistry, 1993 - ACS Publications
The study of liquid water systems using computer simulations and molecular models of
water continues to be of great interest due to the ubiquitous nature of water. 1-3 Even with …
water continues to be of great interest due to the ubiquitous nature of water. 1-3 Even with …
Breaking the polar‐nonpolar division in solvation free energy prediction
Implicit solvent models divide solvation free energies into polar and nonpolar additive
contributions, whereas polar and nonpolar interactions are inseparable and nonadditive. We …
contributions, whereas polar and nonpolar interactions are inseparable and nonadditive. We …
Predictions of hydration free energies from continuum solvent with solute polarizable models: the SAMPL2 blind challenge
A Meunier, JF Truchon - Journal of computer-aided molecular design, 2010 - Springer
This paper reports the results of our attempt to predict hydration free energies on the
SAMPL2 blind challenge dataset. We mostly examine the effects of the solute electrostatic …
SAMPL2 blind challenge dataset. We mostly examine the effects of the solute electrostatic …