Biological reality and parsimony in crop models—why we need both in crop improvement!

G Hammer, C Messina, A Wu, M Cooper - in silico Plants, 2019 - academic.oup.com
The potential to add significant value to the rapid advances in plant breeding technologies
associated with statistical whole-genome prediction methods is a new frontier for crop …

Bringing genetics and biochemistry to crop modelling, and vice versa

X Yin, CG van der Linden, PC Struik - European Journal of Agronomy, 2018 - Elsevier
Genetics, biochemistry, and crop modelling are independently evolving disciplines;
however, they complement each other in addressing some of the important challenges that …

Models for navigating biological complexity in breeding improved crop plants

G Hammer, M Cooper, F Tardieu, S Welch, B Walsh… - Trends in plant …, 2006 - cell.com
Progress in breeding higher-yielding crop plants would be greatly accelerated if the
phenotypic consequences of making changes to the genetic makeup of an organism could …

[HTML][HTML] Integrating crop growth models with whole genome prediction through approximate Bayesian computation

F Technow, CD Messina, LR Totir, M Cooper - PloS one, 2015 - journals.plos.org
Genomic selection, enabled by whole genome prediction (WGP) methods, is revolutionizing
plant breeding. Existing WGP methods have been shown to deliver accurate predictions in …

[HTML][HTML] Modelling strategies for assessing and increasing the effectiveness of new phenotyping techniques in plant breeding

FA Van Eeuwijk, D Bustos-Korts, EJ Millet, MP Boer… - Plant science, 2019 - Elsevier
New types of phenotyping tools generate large amounts of data on many aspects of plant
physiology and morphology with high spatial and temporal resolution. These new …

Molecular breeding for complex adaptive traits: how integrating crop ecophysiology and modelling can enhance efficiency

G Hammer, C Messina, E van Oosterom… - Crop systems biology …, 2016 - Springer
Progress in crop improvement is limited by the ability to identify favourable combinations of
genotypes (G) and management practices (M) in relevant target environments (E) given the …

[HTML][HTML] TraitCapture: genomic and environment modelling of plant phenomic data

TB Brown, R Cheng, XRR Sirault, T Rungrat… - Current opinion in plant …, 2014 - Elsevier
Highlights•High throughput phenotyping with genomic association.•Rapidly identifies
candidate genes.•Enables separation of pleiotropy and linkage to overcome …

Incorporating realistic trait physiology into crop growth models to support genetic improvement

KJ Boote, JW Jones, G Hoogenboom - in silico Plants, 2021 - academic.oup.com
In silico plant modelling is the use of dynamic crop simulation models to evaluate
hypothetical plant traits (phenology, processes and plant architecture) that will enhance crop …

Leveraging biological insight and environmental variation to improve phenotypic prediction: Integrating crop growth models (CGM) with whole genome prediction …

CD Messina, F Technow, T Tang, R Totir, C Gho… - European Journal of …, 2018 - Elsevier
A successful strategy for prediction of crop yield that accounts for the effects of genotype,
environment and their interactions with management will create many opportunities for …

Putting mechanisms into crop production models

KJ Boote, JW Jones, JW White, S Asseng… - Plant, cell & …, 2013 - Wiley Online Library
Crop growth models dynamically simulate processes of C, N and water balance on daily or
hourly time‐steps to predict crop growth and development and at season‐end, final yield …