High-throughput oncogene mutation profiling in human cancer
RK Thomas, AC Baker, RM DeBiasi, W Winckler… - Nature …, 2007 - nature.com
Systematic efforts are underway to decipher the genetic changes associated with tumor
initiation and progression,. However, widespread clinical application of this information is …
initiation and progression,. However, widespread clinical application of this information is …
Computational approaches to identify functional genetic variants in cancer genomes
Nature methods, 2013 - nature.com
Abstract The International Cancer Genome Consortium (ICGC) aims to catalog genomic
abnormalities in tumors from 50 different cancer types. Genome sequencing reveals …
abnormalities in tumors from 50 different cancer types. Genome sequencing reveals …
Defining the blueprint of the cancer genome
VE Velculescu - Carcinogenesis, 2008 - academic.oup.com
It is widely accepted that cancer is a disease caused by accumulation of mutations in
specific genes. These tumor-specific mutations provide clues to the cellular processes …
specific genes. These tumor-specific mutations provide clues to the cellular processes …
Cancer subtype identification using somatic mutation data
Background With the onset of next-generation sequencing technologies, we have made
great progress in identifying recurrent mutational drivers of cancer. As cancer tissues are …
great progress in identifying recurrent mutational drivers of cancer. As cancer tissues are …
Signatures of mutation and selection in the cancer genome
GR Bignell, CD Greenman, H Davies, AP Butler… - Nature, 2010 - nature.com
The cancer genome is moulded by the dual processes of somatic mutation and selection.
Homozygous deletions in cancer genomes occur over recessive cancer genes, where they …
Homozygous deletions in cancer genomes occur over recessive cancer genes, where they …
Mechanisms underlying mutational signatures in human cancers
The collective somatic mutations observed in a cancer are the outcome of multiple
mutagenic processes that have been operative over the lifetime of a patient. Each process …
mutagenic processes that have been operative over the lifetime of a patient. Each process …
Phase and context shape the function of composite oncogenic mutations
Cancers develop as a result of driver mutations, that lead to clonal outgrowth and the
evolution of disease,. The discovery and functional characterization of individual driver …
evolution of disease,. The discovery and functional characterization of individual driver …
A practical framework and online tool for mutational signature analyses show intertissue variation and driver dependencies
A Degasperi, TD Amarante, J Czarnecki, S Shooter… - Nature cancer, 2020 - nature.com
Mutational signatures are patterns of mutations that arise during tumorigenesis. We present
an enhanced, practical framework for mutational signature analyses. Applying these …
an enhanced, practical framework for mutational signature analyses. Applying these …
Identification of neutral tumor evolution across cancer types
Despite extraordinary efforts to profile cancer genomes, interpreting the vast amount of
genomic data in the light of cancer evolution remains challenging. Here we demonstrate that …
genomic data in the light of cancer evolution remains challenging. Here we demonstrate that …
Mutation patterns in cancer genomes
AF Rubin, P Green - … of the National Academy of Sciences, 2009 - National Acad Sciences
Recent large-scale cancer sequencing studies have focused primarily on identifying cancer-
associated genes, but as an important byproduct provide “passenger mutation” data that can …
associated genes, but as an important byproduct provide “passenger mutation” data that can …