Bayesian ensemble methods for survival prediction in gene expression data

V Bonato, V Baladandayuthapani, BM Broom… - …, 2011 - academic.oup.com
Abstract Motivation: We propose a Bayesian ensemble method for survival prediction in high-
dimensional gene expression data. We specify a fully Bayesian hierarchical approach …

[HTML][HTML] Iterative bayesian model averaging: A method for the application of survival analysis to high-dimensional microarray data

A Annest, RE Bumgarner, AE Raftery, KY Yeung - BMC bioinformatics, 2009 - Springer
Background Microarray technology is increasingly used to identify potential biomarkers for
cancer prognostics and diagnostics. Previously, we have developed the iterative Bayesian …

CASPAR: a hierarchical bayesian approach to predict survival times in cancer from gene expression data

L Kaderali, T Zander, U Faigle, J Wolf… - …, 2006 - academic.oup.com
Motivation: DNA microarrays allow the simultaneous measurement of thousands of gene
expression levels in any given patient sample. Gene expression data have been shown to …

Bayesian variable selection for the analysis of microarray data with censored outcomes

N Sha, MG Tadesse, M Vannucci - Bioinformatics, 2006 - academic.oup.com
Motivation: A common task in microarray data analysis consists of identifying genes
associated with a phenotype. When the outcomes of interest are censored time-to-event …

Bayesian data integration and variable selection for pan-cancer survival prediction using protein expression data

AK Maity, A Bhattacharya, BK Mallick… - …, 2020 - academic.oup.com
Accurate prognostic prediction using molecular information is a challenging area of
research, which is essential to develop precision medicine. In this paper, we develop …

[HTML][HTML] Bayesian methods for expression-based integration of various types of genomics data

EM Jennings, JS Morris, RJ Carroll… - EURASIP Journal on …, 2013 - Springer
We propose methods to integrate data across several genomic platforms using a
hierarchical Bayesian analysis framework that incorporates the biological relationships …

Survival prediction using gene expression data: a review and comparison

WN Van Wieringen, D Kun, R Hampel… - Computational statistics & …, 2009 - Elsevier
Knowledge of transcription of the human genome might greatly enhance our understanding
of cancer. In particular, gene expression may be used to predict the survival of cancer …

Integrating biological knowledge with gene expression profiles for survival prediction of cancer

X Chen, L Wang - Journal of Computational Biology, 2009 - liebertpub.com
Due to the large variability in survival times between cancer patients and the plethora of
genes on microarrays unrelated to outcome, building accurate prediction models that are …

Bayesian methods for variable selection in survival models with application to DNA microarray data

KE Lee, BK Mallick - Sankhyā: The Indian Journal of Statistics, 2004 - JSTOR
Selection of significant genes via expression patterns is important in a microarray problem.
Owing to small sample size and large number of variables (genes), the selection process …

[HTML][HTML] Additive risk survival model with microarray data

S Ma, J Huang - BMC bioinformatics, 2007 - Springer
Background Microarray techniques survey gene expressions on a global scale. Extensive
biomedical studies have been designed to discover subsets of genes that are associated …