[HTML][HTML] Optimal experiment design for model selection in biochemical networks

J Vanlier, CA Tiemann, PAJ Hilbers, NAW van Riel - BMC systems biology, 2014 - Springer
Background Mathematical modeling is often used to formalize hypotheses on how a
biochemical network operates by discriminating between competing models. Bayesian …

Bayesian models for DNA sequencing

NM Haan, SJ Godsill - 2002 IEEE International Conference on …, 2002 - ieeexplore.ieee.org
It is becoming increasingly important to develop novel signal processing and statistical
analysis techniques to extract information from biotechnology. This task is complicated by …

[HTML][HTML] Bayesian estimation reveals that reproducible models in Systems Biology get more citations

S Höpfl, J Pleiss, NE Radde - Scientific Reports, 2023 - nature.com
Abstract The Systems Biology community has taken numerous actions to develop data and
modeling standards towards FAIR data and model handling. Nevertheless, the debate about …

Generalized empirical Bayesian methods for discovery of differential data in high-throughput biology

TJ Hardcastle - Bioinformatics, 2016 - academic.oup.com
Motivation: High-throughput data are now commonplace in biological research. Rapidly
changing technologies and application mean that novel methods for detecting differential …

Approximate Bayesian computation (ABC) gives exact results under the assumption of model error

RD Wilkinson - Statistical applications in genetics and molecular …, 2013 - degruyter.com
Approximate Bayesian computation (ABC) or likelihood-free inference algorithms are used
to find approximations to posterior distributions without making explicit use of the likelihood …

Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks

I Shmulevich, ER Dougherty, S Kim, W Zhang - Bioinformatics, 2002 - academic.oup.com
Motivation: Our goal is to construct a model for genetic regulatory networks such that the
model class:(i) incorporates rule-based dependencies between genes;(ii) allows the …

[图书][B] Probabilistic methods for financial and marketing informatics

RE Neapolitan, X Jiang - 2010 - books.google.com
Probabilistic Methods for Financial and Marketing Informatics aims to provide students with
insights and a guide explaining how to apply probabilistic reasoning to business problems …

[图书][B] Case studies in Bayesian statistical modelling and analysis

C Alston, KL Mengersen, AN Pettitt, J Wiley - 2012 - Wiley Online Library
Bayesian statistics is now an established statistical methodology in almost all research
disciplines and is being applied to a very wide range of problems. These approaches are …

Supervised learning with decision tree-based methods in computational and systems biology

P Geurts, A Irrthum, L Wehenkel - Molecular Biosystems, 2009 - pubs.rsc.org
At the intersection between artificial intelligence and statistics, supervised learning allows
algorithms to automatically build predictive models from just observations of a system …

Methods for the inference of biological pathways and networks

RE Bumgarner, KY Yeung - Computational Systems Biology, 2009 - Springer
In this chapter, we discuss a number of approaches to network inference from large-scale
functional genomics data. Our goal is to describe current methods that can be used to infer …