DeepDTAF: a deep learning method to predict protein–ligand binding affinity

K Wang, R Zhou, Y Li, M Li - Briefings in Bioinformatics, 2021 - academic.oup.com
Biomolecular recognition between ligand and protein plays an essential role in drug
discovery and development. However, it is extremely time and resource consuming to …

CAPLA: improved prediction of protein–ligand binding affinity by a deep learning approach based on a cross-attention mechanism

Z Jin, T Wu, T Chen, D Pan, X Wang, J Xie… - …, 2023 - academic.oup.com
Motivation Accurate and rapid prediction of protein–ligand binding affinity is a great
challenge currently encountered in drug discovery. Recent advances have manifested a …

[HTML][HTML] Binding affinity prediction for protein–ligand complex using deep attention mechanism based on intermolecular interactions

S Seo, J Choi, S Park, J Ahn - BMC bioinformatics, 2021 - Springer
Background Accurate prediction of protein–ligand binding affinity is important for lowering
the overall cost of drug discovery in structure-based drug design. For accurate predictions …

DeepAtom: A framework for protein-ligand binding affinity prediction

Y Li, MA Rezaei, C Li, X Li - 2019 IEEE international …, 2019 - ieeexplore.ieee.org
The cornerstone of computational drug design is the calculation of binding affinity between
two biological counterparts especially a chemical compound, ie a ligand, and a protein …

FABind: Fast and accurate protein-ligand binding

Q Pei, K Gao, L Wu, J Zhu, Y Xia… - Advances in …, 2024 - proceedings.neurips.cc
Modeling the interaction between proteins and ligands and accurately predicting their
binding structures is a critical yet challenging task in drug discovery. Recent advancements …

Deep learning in drug design: protein-ligand binding affinity prediction

MA Rezaei, Y Li, D Wu, X Li, C Li - IEEE/ACM transactions on …, 2020 - ieeexplore.ieee.org
Computational drug design relies on the calculation of binding strength between two
biological counterparts especially a chemical compound, ie, a ligand, and a protein …

[HTML][HTML] SE-OnionNet: a convolution neural network for protein–ligand binding affinity prediction

S Wang, D Liu, M Ding, Z Du, Y Zhong, T Song… - Frontiers in …, 2021 - frontiersin.org
Deep learning methods, which can predict the binding affinity of a drug–target protein
interaction, reduce the time and cost of drug discovery. In this study, we propose a novel …

Hac-net: A hybrid attention-based convolutional neural network for highly accurate protein–ligand binding affinity prediction

GW Kyro, RI Brent, VS Batista - Journal of Chemical Information …, 2023 - ACS Publications
Applying deep learning concepts from image detection and graph theory has greatly
advanced protein–ligand binding affinity prediction, a challenge with enormous ramifications …

[HTML][HTML] AK-score: accurate protein-ligand binding affinity prediction using an ensemble of 3D-convolutional neural networks

Y Kwon, WH Shin, J Ko, J Lee - International journal of molecular …, 2020 - mdpi.com
Accurate prediction of the binding affinity of a protein-ligand complex is essential for efficient
and successful rational drug design. Therefore, many binding affinity prediction methods …

WideDTA: prediction of drug-target binding affinity

H Öztürk, E Ozkirimli, A Özgür - arXiv preprint arXiv:1902.04166, 2019 - arxiv.org
Motivation: Prediction of the interaction affinity between proteins and compounds is a major
challenge in the drug discovery process. WideDTA is a deep-learning based prediction …