RNAcentral 2021: secondary structure integration, improved sequence search and new member databases
Nucleic acids research, 2021 - academic.oup.com
RNAcentral is a comprehensive database of non-coding RNA (ncRNA) sequences that
provides a single access point to 44 RNA resources and> 18 million ncRNA sequences from …
provides a single access point to 44 RNA resources and> 18 million ncRNA sequences from …
RNAcentral: a hub of information for non-coding RNA sequences
Nucleic Acids Research, 2019 - academic.oup.com
RNAcentral is a comprehensive database of non-coding RNA (ncRNA) sequences, collating
information on ncRNA sequences of all types from a broad range of organisms. We have …
information on ncRNA sequences of all types from a broad range of organisms. We have …
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families
I Kalvari, J Argasinska, N Quinones-Olvera… - Nucleic acids …, 2018 - academic.oup.com
The Rfam database is a collection of RNA families in which each family is represented by a
multiple sequence alignment, a consensus secondary structure, and a covariance model. In …
multiple sequence alignment, a consensus secondary structure, and a covariance model. In …
RNAcentral: a comprehensive database of non-coding RNA sequences
Nucleic acids research, 2017 - academic.oup.com
RNAcentral is a database of non-coding RNA (ncRNA) sequences that aggregates data
from specialised ncRNA resources and provides a single entry point for accessing ncRNA …
from specialised ncRNA resources and provides a single entry point for accessing ncRNA …
Rfam 12.0: updates to the RNA families database
The Rfam database (available at http://rfam. xfam. org) is a collection of non-coding RNA
families represented by manually curated sequence alignments, consensus secondary …
families represented by manually curated sequence alignments, consensus secondary …
R2R-software to speed the depiction of aesthetic consensus RNA secondary structures
Z Weinberg, RR Breaker - BMC bioinformatics, 2011 - Springer
Background With continuing identification of novel structured noncoding RNAs, there is an
increasing need to create schematic diagrams showing the consensus features of these …
increasing need to create schematic diagrams showing the consensus features of these …
Non‐coding RNA analysis using the Rfam database
I Kalvari, EP Nawrocki, J Argasinska… - Current protocols in …, 2018 - Wiley Online Library
Rfam is a database of non‐coding RNA families in which each family is represented by a
multiple sequence alignment, a consensus secondary structure, and a covariance model …
multiple sequence alignment, a consensus secondary structure, and a covariance model …
RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution)
A consensus classification and nomenclature are defined for RNA backbone structure using
all of the backbone torsion angles. By a consensus of several independent analysis …
all of the backbone torsion angles. By a consensus of several independent analysis …
R2DT is a framework for predicting and visualising RNA secondary structure using templates
Non-coding RNAs (ncRNA) are essential for all life, and their functions often depend on their
secondary (2D) and tertiary structure. Despite the abundance of software for the …
secondary (2D) and tertiary structure. Despite the abundance of software for the …
RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures
Background Recent discoveries concerning novel functions of RNA, such as RNA
interference, have contributed towards the growing importance of the field. In this respect, a …
interference, have contributed towards the growing importance of the field. In this respect, a …