Assessing the performances of different continuum solvation models for the calculation of hydration energies of molecules, polymers and surfaces: a comparison …
IC Oğuz, D Vassetti, F Labat - Theoretical Chemistry Accounts, 2021 - Springer
We present a comparison of the performances of three continuum solvation models, namely
the Solvation Model Density (SMD), VASPsol and Finite-Difference Poisson Boltzmann …
the Solvation Model Density (SMD), VASPsol and Finite-Difference Poisson Boltzmann …
New universal solvation model and comparison of the accuracy of the SM5. 42R, SM5. 43R, C-PCM, D-PCM, and IEF-PCM continuum solvation models for aqueous …
JD Thompson, CJ Cramer… - The Journal of Physical …, 2004 - ACS Publications
We present a new continuum solvation model, called Solvation Model 5.43 R (SM5. 43R).
The model is based on the generalized Born approximation for electrostatics augmented by …
The model is based on the generalized Born approximation for electrostatics augmented by …
A universal approach to solvation modeling
CJ Cramer, DG Truhlar - Accounts of chemical research, 2008 - ACS Publications
Continuum mean-field models that have been carefully designed to address the various
electrostatic and nonelectrostatic interactions that develop between a molecule and a …
electrostatic and nonelectrostatic interactions that develop between a molecule and a …
The impact of surface area, volume, curvature, and lennard–jones potential to solvation modeling
This article explores the impact of surface area, volume, curvature, and Lennard–Jones (LJ)
potential on solvation free energy predictions. Rigidity surfaces are utilized to generate …
potential on solvation free energy predictions. Rigidity surfaces are utilized to generate …
Calculation of the free energy of solvation from molecular dynamics simulations
PFB Gonçalves, H Stassen - Pure and applied chemistry, 2004 - degruyter.com
Molecular dynamics simulation has been employed in the computation of the free energy of
solvation for a large number of solute molecules with different chemical functionalities in the …
solvation for a large number of solute molecules with different chemical functionalities in the …
Free energies of solvation with surface, volume, and local electrostatic effects and atomic surface tensions to represent the first solvation shell
J Liu, CP Kelly, AC Goren, AV Marenich… - Journal of chemical …, 2010 - ACS Publications
Building on the SVPE (surface and volume polarization for electrostatics) model for
electrostatic contributions to the free energy of solvation with explicit consideration of both …
electrostatic contributions to the free energy of solvation with explicit consideration of both …
Development of surface-SFED models for polar solvents
We developed surface grid-based solvation free energy density (Surface-SFED) models for
36 commonly used polar solvents. The parametrization was performed with a large and …
36 commonly used polar solvents. The parametrization was performed with a large and …
Universal solvation models
This chapter presents an overview of the SM5 suite of universal solvation models for
computing free energies of solvation in water and nonaqueous solvents. After a general …
computing free energies of solvation in water and nonaqueous solvents. After a general …
Solvation thermodynamics of solutes in water and ionic liquids using the multiscale solvation-layer interface condition continuum model
Molecular assembly processes are generally driven by thermodynamic properties in
solutions. Atomistic modeling can be very helpful in designing and understanding complex …
solutions. Atomistic modeling can be very helpful in designing and understanding complex …
Accuracy comparison of several common implicit solvent models and their implementations in the context of protein-ligand binding
EV Katkova, AV Onufriev, B Aguilar… - Journal of Molecular …, 2017 - Elsevier
In this study several commonly used implicit solvent models are compared with respect to
their accuracy of estimating solvation energies of small molecules and proteins, as well as …
their accuracy of estimating solvation energies of small molecules and proteins, as well as …