Assessing the performances of different continuum solvation models for the calculation of hydration energies of molecules, polymers and surfaces: a comparison …

IC Oğuz, D Vassetti, F Labat - Theoretical Chemistry Accounts, 2021 - Springer
We present a comparison of the performances of three continuum solvation models, namely
the Solvation Model Density (SMD), VASPsol and Finite-Difference Poisson Boltzmann …

New universal solvation model and comparison of the accuracy of the SM5. 42R, SM5. 43R, C-PCM, D-PCM, and IEF-PCM continuum solvation models for aqueous …

JD Thompson, CJ Cramer… - The Journal of Physical …, 2004 - ACS Publications
We present a new continuum solvation model, called Solvation Model 5.43 R (SM5. 43R).
The model is based on the generalized Born approximation for electrostatics augmented by …

A universal approach to solvation modeling

CJ Cramer, DG Truhlar - Accounts of chemical research, 2008 - ACS Publications
Continuum mean-field models that have been carefully designed to address the various
electrostatic and nonelectrostatic interactions that develop between a molecule and a …

The impact of surface area, volume, curvature, and lennard–jones potential to solvation modeling

DD Nguyen, GW Wei - Journal of computational chemistry, 2017 - Wiley Online Library
This article explores the impact of surface area, volume, curvature, and Lennard–Jones (LJ)
potential on solvation free energy predictions. Rigidity surfaces are utilized to generate …

Calculation of the free energy of solvation from molecular dynamics simulations

PFB Gonçalves, H Stassen - Pure and applied chemistry, 2004 - degruyter.com
Molecular dynamics simulation has been employed in the computation of the free energy of
solvation for a large number of solute molecules with different chemical functionalities in the …

Free energies of solvation with surface, volume, and local electrostatic effects and atomic surface tensions to represent the first solvation shell

J Liu, CP Kelly, AC Goren, AV Marenich… - Journal of chemical …, 2010 - ACS Publications
Building on the SVPE (surface and volume polarization for electrostatics) model for
electrostatic contributions to the free energy of solvation with explicit consideration of both …

Development of surface-SFED models for polar solvents

S Lee, KH Cho, WE Acree Jr, KT No - Journal of chemical …, 2012 - ACS Publications
We developed surface grid-based solvation free energy density (Surface-SFED) models for
36 commonly used polar solvents. The parametrization was performed with a large and …

Universal solvation models

GD Hawkins, T Zhu, J Li, CC Chambers, DJ Giesen… - 1998 - ACS Publications
This chapter presents an overview of the SM5 suite of universal solvation models for
computing free energies of solvation in water and nonaqueous solvents. After a general …

Solvation thermodynamics of solutes in water and ionic liquids using the multiscale solvation-layer interface condition continuum model

AM Rahimi, S Jamali, JP Bardhan… - Journal of Chemical …, 2022 - ACS Publications
Molecular assembly processes are generally driven by thermodynamic properties in
solutions. Atomistic modeling can be very helpful in designing and understanding complex …

Accuracy comparison of several common implicit solvent models and their implementations in the context of protein-ligand binding

EV Katkova, AV Onufriev, B Aguilar… - Journal of Molecular …, 2017 - Elsevier
In this study several commonly used implicit solvent models are compared with respect to
their accuracy of estimating solvation energies of small molecules and proteins, as well as …