Learning Over Molecular Conformer Ensembles: Datasets and Benchmarks
Molecular Representation Learning (MRL) has proven impactful in numerous biochemical
applications such as drug discovery and enzyme design. While Graph Neural Networks …
applications such as drug discovery and enzyme design. While Graph Neural Networks …
Graph-based molecular representation learning
Molecular representation learning (MRL) is a key step to build the connection between
machine learning and chemical science. In particular, it encodes molecules as numerical …
machine learning and chemical science. In particular, it encodes molecules as numerical …
Molecular machine learning with conformer ensembles
S Axelrod, R Gomez-Bombarelli - Machine Learning: Science …, 2023 - iopscience.iop.org
Virtual screening can accelerate drug discovery by identifying promising candidates for
experimental evaluation. Machine learning is a powerful method for screening, as it can …
experimental evaluation. Machine learning is a powerful method for screening, as it can …
Molecular contrastive learning of representations via graph neural networks
Molecular machine learning bears promise for efficient molecular property prediction and
drug discovery. However, labelled molecule data can be expensive and time consuming to …
drug discovery. However, labelled molecule data can be expensive and time consuming to …
Molcpt: Molecule continuous prompt tuning to generalize molecular representation learning
Molecular representation learning is crucial for the problem of molecular property prediction,
where graph neural networks (GNNs) serve as an effective solution due to their structure …
where graph neural networks (GNNs) serve as an effective solution due to their structure …
Smiclr: Contrastive learning on multiple molecular representations for semisupervised and unsupervised representation learning
GA Pinheiro, JLF Da Silva… - Journal of Chemical …, 2022 - ACS Publications
Machine learning as a tool for chemical space exploration broadens horizons to work with
known and unknown molecules. At its core lies molecular representation, an essential key to …
known and unknown molecules. At its core lies molecular representation, an essential key to …
[HTML][HTML] Geometry-enhanced molecular representation learning for property prediction
Effective molecular representation learning is of great importance to facilitate molecular
property prediction. Recent advances for molecular representation learning have shown …
property prediction. Recent advances for molecular representation learning have shown …
A focus on molecular representation learning for the prediction of chemical properties
Y Harnik, A Milo - Chemical Science, 2024 - pubs.rsc.org
Molecular representation learning (MRL) is a specialized field in which deep-learning
models condense essential molecular information into a vectorized form. Whereas recent …
models condense essential molecular information into a vectorized form. Whereas recent …
A Multi-view Molecular Pre-training with Generative Contrastive Learning
Y Liu, R Zhang, J Ma, T Li, Z Yu - … Sciences: Computational Life …, 2024 - Springer
Molecular representation learning can preserve meaningful molecular structures as
embedding vectors, which is a necessary prerequisite for molecular property prediction. Yet …
embedding vectors, which is a necessary prerequisite for molecular property prediction. Yet …
A 3D-Shape Similarity-based Contrastive Approach to Molecular Representation Learning
Molecular shape and geometry dictate key biophysical recognition processes, yet many
graph neural networks disregard 3D information for molecular property prediction. Here, we …
graph neural networks disregard 3D information for molecular property prediction. Here, we …