[PDF][PDF] Functional association of Gdown1 with RNA polymerase II poised on human genes

B Cheng, T Li, PB Rahl, TE Adamson, NB Loudas… - Molecular cell, 2012 - cell.com
Most human genes are loaded with promoter-proximally paused RNA polymerase II (Pol II)
molecules that are poised for release into productive elongation by P-TEFb. We present …

Control of transcriptional elongation

H Kwak, JT Lis - Annual review of genetics, 2013 - annualreviews.org
Elongation is becoming increasingly recognized as a critical step in eukaryotic
transcriptional regulation. Although traditional genetic and biochemical studies have …

TFIID or not TFIID, a continuing transcriptional SAGA

S Kubik, MJ Bruzzone, D Shore - The EMBO journal, 2017 - embopress.org
Eukaryotic protein‐coding genes are typically classified into two groups: those with
expression regulated by specific signals versus the relatively constant “housekeeping” …

[PDF][PDF] Integrator endonuclease drives promoter-proximal termination at all RNA polymerase II-transcribed loci

CB Stein, AR Field, CA Mimoso, CC Zhao, KL Huang… - Molecular cell, 2022 - cell.com
Summary RNA polymerase II (RNAPII) pausing in early elongation is critical for gene
regulation. Paused RNAPII can be released into productive elongation by the kinase P-TEFb …

Deciphering transcriptional regulation of human core promoters

S Weingarten-Gabbay, R Nir, S Lubliner, E Sharon… - bioRxiv, 2017 - biorxiv.org
Although traditionally viewed as universal stretches of DNA, core promoters are diverse
regulatory sequences with a high impact on transcriptional activity in promoters and …

Dynamics and heterogeneity of Erk-induced immediate-early gene expression

SG Jena, C Yu, JE Toettcher - bioRxiv, 2021 - biorxiv.org
Many canonical signaling pathways exhibit complex time-varying responses, yet how
minutes-timescale pulses of signaling interact with the dynamics of transcription and gene …

H3K4 di-and trimethylation modulate the stability of RNA polymerase II pausing

S Hu, A Song, L Peng, N Tang, Z Qiao, Z Wang… - BioRxiv, 2022 - biorxiv.org
Modifications of histones are intricately linked with the regulation of gene expression, with
demonstrated roles in various physiological processes and disease pathogenesis …

[图书][B] Elucidating the role of eukaryotic initiation factor 5B (eIF5B) in non-canonical translation initiation

KR Bressler - 2019 - search.proquest.com
Cap-dependent translation drives the global synthesis of proteins. Under stress conditions
global protein production is attenuated, yet the translation of ATF4 is upregulated through …

Transcription bursting and epigenetic plasticity: an updated view

WF Beckman, MÁL Jiménez, PJ Verschure - Epigenetics Communications, 2021 - Springer
The vast majority of eukaryotic transcription occurs in bursts during discrete periods of
promoter activity, separated by periods of deep repression and inactivity. Elucidating the …

Targeted Perturb-seq Reveals EGR1 and FOS as Key Regulators of the Transcriptional RAF-MAPK Response

G El Kassem, A Sieber, B Klinger, F Uhlitz… - bioRxiv, 2024 - biorxiv.org
The MAPK pathway is an important cellular signaling cascade whose dysregulation causes
a variety of diseases. While the upstream regulators of this cascade have been extensively …