DNA methylation-based sex classifier to predict sex and identify sex chromosome aneuploidy

Y Wang, E Hannon, OA Grant, TJ Gorrie-Stone… - BMC genomics, 2021 - Springer
Background Sex is an important covariate of epigenome-wide association studies due to its
strong influence on DNA methylation patterns across numerous genomic positions …

sEst: accurate sex-estimation and abnormality detection in methylation microarray data

CH Jung, DJ Park, P Georgeson, K Mahmood… - International Journal of …, 2018 - mdpi.com
DNA methylation influences predisposition, development and prognosis for many diseases,
including cancer. However, it is not uncommon to encounter samples with incorrect sex …

Characterising sex differences of autosomal DNA methylation in whole blood using the Illumina EPIC array

OA Grant, Y Wang, M Kumari, NR Zabet… - Clinical epigenetics, 2022 - Springer
Background Sex differences are known to play a role in disease aetiology, progression and
outcome. Previous studies have revealed autosomal epigenetic differences between males …

Autosomal sex-associated co-methylated regions predict biological sex from DNA methylation

E Gatev, AM Inkster, GL Negri, C Konwar… - Nucleic Acids …, 2021 - academic.oup.com
Sex is a modulator of health that has been historically overlooked in biomedical research.
Recognizing this knowledge gap, funding agencies now mandate the inclusion of sex as a …

A study of the influence of sex on genome wide methylation

J Liu, M Morgan, K Hutchison, VD Calhoun - PloS one, 2010 - journals.plos.org
Sex differences in methylation status have been observed in specific gene-disease studies
and healthy methylation variation studies, but little work has been done to study the impact …

A permutation-based approach using a rank-based statistic to identify sex differences in epigenetics

AJ Sommer, J Okonkwo, J Monteiro, MAC Bind - Scientific Reports, 2023 - nature.com
Epigenetic sex differences and their resulting implications for human health have been
studied for about a decade. The objective of this paper is to use permutation-based …

EWAS Data Hub: a resource of DNA methylation array data and metadata

Z Xiong, M Li, F Yang, Y Ma, J Sang, R Li… - Nucleic Acids …, 2020 - academic.oup.com
Abstract Epigenome-Wide Association Study (EWAS) has become an effective strategy to
explore epigenetic basis of complex traits. Over the past decade, a large amount of …

Genome-wide methylation data mirror ancestry information

E Rahmani, L Shenhav, R Schweiger, P Yousefi… - Epigenetics & …, 2017 - Springer
Background Genetic data are known to harbor information about human demographics, and
genotyping data are commonly used for capturing ancestry information by leveraging …

[HTML][HTML] Predicting gene expression using DNA methylation in three human populations

H Zhong, S Kim, D Zhi, X Cui - PeerJ, 2019 - peerj.com
Background DNA methylation, an important epigenetic mark, is well known for its regulatory
role in gene expression, especially the negative correlation in the promoter region …

Association of DNA methylation with age, gender, and smoking in an Arab population

SB Zaghlool, M Al-Shafai, WA Al Muftah, P Kumar… - Clinical …, 2015 - Springer
Background Modification of DNA by methylation of cytosines at CpG dinucleotides is a
widespread phenomenon that leads to changes in gene expression, thereby influencing and …