[HTML][HTML] Spatial genomics maps the structure, nature and evolution of cancer clones

A Lomakin, J Svedlund, C Strell, M Gataric, A Shmatko… - Nature, 2022 - nature.com
Genome sequencing of cancers often reveals mosaics of different subclones present in the
same tumour,–. Although these are believed to arise according to the principles of somatic …

Spatial genomics enables multi-modal study of clonal heterogeneity in tissues

T Zhao, ZD Chiang, JW Morriss, LM LaFave… - Nature, 2022 - nature.com
The state and behaviour of a cell can be influenced by both genetic and environmental
factors. In particular, tumour progression is determined by underlying genetic aberrations …

Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution

P Eirew, A Steif, J Khattra, G Ha, D Yap, H Farahani… - Nature, 2015 - nature.com
Human cancers, including breast cancers, comprise clones differing in mutation content.
Clones evolve dynamically in space and time following principles of Darwinian evolution …

Tumour evolution inferred by single-cell sequencing

N Navin, J Kendall, J Troge, P Andrews, L Rodgers… - Nature, 2011 - nature.com
Genomic analysis provides insights into the role of copy number variation in disease, but
most methods are not designed to resolve mixed populations of cells. In tumours, where …

Subclonal diversification of primary breast cancer revealed by multiregion sequencing

LR Yates, M Gerstung, S Knappskog, C Desmedt… - Nature medicine, 2015 - nature.com
The sequencing of cancer genomes may enable tailoring of therapeutics to the underlying
biological abnormalities driving a particular patient's tumor. However, sequencing-based …

Clonal evolution in breast cancer revealed by single nucleus genome sequencing

Y Wang, J Waters, ML Leung, A Unruh, W Roh, X Shi… - Nature, 2014 - nature.com
Sequencing studies of breast tumour cohorts have identified many prevalent mutations, but
provide limited insight into the genomic diversity within tumours. Here we developed a …

Quantification of subclonal selection in cancer from bulk sequencing data

MJ Williams, B Werner, T Heide, C Curtis, CP Barnes… - Nature …, 2018 - nature.com
Subclonal architectures are prevalent across cancer types. However, the temporal
evolutionary dynamics that produce tumor subclones remain unknown. Here we measure …

Selection of metastasis competent subclones in the tumour interior

Y Zhao, X Fu, JI Lopez, A Rowan, L Au… - Nature ecology & …, 2021 - nature.com
The genetic evolutionary features of solid tumour growth are becoming increasingly well
described, but the spatial and physical nature of subclonal growth remains unclear. Here …

Whole-genome single-cell copy number profiling from formalin-fixed paraffin-embedded samples

LG Martelotto, T Baslan, J Kendall, FC Geyer… - Nature medicine, 2017 - nature.com
A substantial proportion of tumors consist of genotypically distinct subpopulations of cancer
cells. This intratumor genetic heterogeneity poses a substantial challenge for the …

[HTML][HTML] Spatially resolved clonal copy number alterations in benign and malignant tissue

A Erickson, M He, E Berglund, M Marklund… - Nature, 2022 - nature.com
Defining the transition from benign to malignant tissue is fundamental to improving early
diagnosis of cancer. Here we use a systematic approach to study spatial genome integrity in …