How do we compare hundreds of bacterial genomes?

D Field, G Wilson, C Van Der Gast - Current opinion in microbiology, 2006 - Elsevier
The genomic revolution is fully upon us in 2006 and the pace of discovery is set to
accelerate with the emergence of ultra-high-throughput sequencing technologies. Our …

Sequencing the species pan-genome

S Bentley - Nature Reviews Microbiology, 2009 - nature.com
Abstract This month's Genome Watch discusses the recent advances in sequencing
technology that have allowed microbiologists to determine the genome sequences not just …

Ten years of bacterial genome sequencing: comparative-genomics-based discoveries

TT Binnewies, Y Motro, PF Hallin, O Lund… - Functional & integrative …, 2006 - Springer
It has been more than 10 years since the first bacterial genome sequence was published.
Hundreds of bacterial genome sequences are now available for comparative genomics, and …

Insights from 20 years of bacterial genome sequencing

M Land, L Hauser, SR Jun, I Nookaew… - Functional & integrative …, 2015 - Springer
Since the first two complete bacterial genome sequences were published in 1995, the
science of bacteria has dramatically changed. Using third-generation DNA sequencing, it is …

What has high-throughput sequencing ever done for us?

J Parkhill - Nature Reviews Microbiology, 2013 - nature.com
What has high-throughput sequencing ever done for us? | Nature Reviews Microbiology Skip to
main content Thank you for visiting nature.com. You are using a browser version with limited …

Findings emerging from complete microbial genome sequences

RA Clayton, O White, CM Fraser - Current Opinion in Microbiology, 1998 - Elsevier
Sixteen microorganisms, including one eukaryote, four archaeons, and 11 eubacteria, have
been completely sequenced and published. More than 50 genomes are scheduled to be …

High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity

NJ Loman, C Constantinidou, JZM Chan… - Nature Reviews …, 2012 - nature.com
Here, we take a snapshot of the high-throughput sequencing platforms, together with the
relevant analytical tools, that are available to microbiologists in 2012, and evaluate the …

Microbial genomes

MJ Pallen - 1999 - Wiley Online Library
Microbial genome sequencing is driven by the need to understand and control pathogens
and to exploit extremophiles and their enzymes in bioremediation and industry. It is hard for …

De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer

D Hernandez, P François, L Farinelli… - Genome …, 2008 - genome.cshlp.org
Novel high-throughput DNA sequencing technologies allow researchers to characterize a
bacterial genome during a single experiment and at a moderate cost. However, the increase …

Microbial genomics—challenges and opportunities: the 9th International Conference on Microbial Genomes

J Zhou, JH Miller - Journal of bacteriology, 2002 - Am Soc Microbiol
Genomic sequencing and analysis are in a period of “exponential growth.” More than 60
eukaryotic and prokaryotic genomes have been completely sequenced, with analysis of …