Variability, Recombination, and Mosaic Evolution of the Barley BARE-1 Retrotransposon

CM Vicient, R Kalendar, AH Schulman - Journal of Molecular Evolution, 2005 - Springer
BARE-1 is a highly abundant, copia-like, LTR (long terminal repeat) retrotransposon in the
genus Hordeum. The LTRs provide the promoter, terminator, and polyadenylation signals …

Retrotransposon BARE-1 is a major, dispersed component of the barley (Hordeum vulgare L.) genome

A Suoniemi, K Anamthawat-Jónsson, T Arna… - Plant Molecular …, 1996 - Springer
The barley BARE-1 is a transcribed, copia-like retroelement with well-conserved functional
domains, an active promoter, and a copy number of at least 3× 10 4. We examined its …

BARE retrotransposons produce multiple groups of rarely polyadenylated transcripts from two differentially regulated promoters

W Chang, AH Schulman - The Plant Journal, 2008 - Wiley Online Library
The BARE retrotransposon family comprises more than 104 copies in the barley (Hordeum
vulgare) genome. The element is bounded by long terminal repeats (LTRs, 1829 bp) …

Retrotransposon BARE-1 and Its Role in Genome Evolution in the Genus Hordeum

CM Vicient, A Suoniemi, K Anamthawat-Jónsson… - The Plant …, 1999 - academic.oup.com
The replicative retrotransposon life cycle offers the potential for explosive increases in copy
number and consequent inflation of genome size. The BARE-1 retrotransposon family of …

Structure, functionality, and evolution of the BARE-1 retrotransposon of barley

CM Vicient, R Kalendar… - … Elements and Genome …, 2000 - Springer
The BARE-1 retrotransposon is a major, active component of the genome of barley
(Hordeum vulgare L.) and other Hordeum species. Copia-like in its organization, it consists …

BARE-1 insertion site preferences and evolutionary conservation of RNA and cDNA processing sites

A Suoniemi, D Schmidt, AH Schulman - Evolution and Impact of …, 1997 - Springer
The BARE-1 copia-like retrotransposon constitutes nearly 7% of the barley (Hordeum
vulgare L.) genome as a family of more than 2× 10 4 mostly full-length copies dispersed on …

The BARE-1 retrotransposon is transcribed in barley from an LTR promoter active in transient assays

A Suoniemi, A Narvanto, AH Schulman - Plant molecular biology, 1996 - Springer
The BARE-1 retrotransposon occurs in more than 10 4 copies in the barley genome. The
element is bounded by long terminal repeats (LTRs, 1829 bp) containing motifs typical of …

A movable feast: diverse retrotransposons and their contribution to barley genome dynamics

AH Schulman, R Kalendar - Cytogenetic and genome research, 2005 - karger.com
Cellular genes comprise at most 5% of the barley genome; the rest is occupied primarily by
retrotransposons. Retrotransposons move intracellularly by a replicative mechanism similar …

Life without GAG: The BARE-2 retrotransposon as a parasite's parasite

JA Tanskanen, F Sabot, C Vicient, AH Schulman - Gene, 2007 - Elsevier
A large proportion of the plant LTR (Long Terminal Repeat) retrotransposons are partly or
completely unable to synthesize their own machinery for transposition. However, most of …

Large retrotransposon derivatives: abundant, conserved but nonautonomous retroelements of barley and related genomes

R Kalendar, CM Vicient, O Peleg… - Genetics, 2004 - academic.oup.com
Retroviruses and LTR retrotransposons comprise two long-terminal repeats (LTRs)
bounding a central domain that encodes the products needed for reverse transcription …