[HTML][HTML] Technological advances and computational approaches for alternative splicing analysis in single cells

WX Wen, AJ Mead, S Thongjuea - Computational and structural …, 2020 - Elsevier
Alternative splicing of RNAs generates isoform diversity, resulting in different proteins that
are necessary for maintaining cellular function and identity. The discovery of alternative …

MARVEL: an integrated alternative splicing analysis platform for single-cell RNA sequencing data

WX Wen, AJ Mead, S Thongjuea - Nucleic Acids Research, 2023 - academic.oup.com
Alternative splicing is an important source of heterogeneity underlying gene expression
between individual cells but remains an understudied area due to the paucity of …

[PDF][PDF] RNA splicing analysis: from in vitro testing to single-cell imaging

X Ren, K Zhang, R Deng, J Li - Chem, 2019 - cell.com
RNA splicing is a fundamental regulatory process of gene expression and plays a pivotal
role in transcriptome complexity, cell-fate determination, and organism development. The …

[HTML][HTML] Alternative splicing: Human disease and quantitative analysis from high-throughput sequencing

W Jiang, L Chen - Computational and structural biotechnology journal, 2021 - Elsevier
Alternative splicing contributes to the majority of protein diversity in higher eukaryotes by
allowing one gene to generate multiple distinct protein isoforms. It adds another regulation …

[HTML][HTML] A survey of computational methods in transcriptome-wide alternative splicing analysis

J Wang, Z Ye, THM Huang, H Shi, V Jin - Biomolecular concepts, 2015 - degruyter.com
Alternative splicing is widely recognized for its roles in regulating genes and creating gene
diversity. Consequently the identification and quantification of differentially spliced …

[HTML][HTML] Alternative Splicing in Human Physiology and Disease

PI Artemaki, CK Kontos - Genes, 2022 - mdpi.com
Since the discovery of alternative splicing in the late 1970s, a great number of alternatively
spliced transcripts have emerged; this number has exponentially increased with the …

[PDF][PDF] Single-cell alternative splicing analysis with expedition reveals splicing dynamics during neuron differentiation

Y Song, OB Botvinnik, MT Lovci, B Kakaradov, P Liu… - Molecular cell, 2017 - cell.com
Alternative splicing (AS) generates isoform diversity for cellular identity and homeostasis in
multicellular life. Although AS variation has been observed among single cells, little is …

Alternative splicing in stem cell self-renewal and diferentiation

DA Nelles, GW Yeo - Adv Exp Med Biol, 2010 - Springer
This chapter provides a review of recent advances in understanding the importance of
alternative pre-messenger RNA splicing in stem cell biology. The majority of transcribed pre …

Robust and annotation-free analysis of alternative splicing across diverse cell types in mice

G Benegas, J Fischer, YS Song - Elife, 2022 - elifesciences.org
Although alternative splicing is a fundamental and pervasive aspect of gene expression in
higher eukaryotes, it is often omitted from single-cell studies due to quantification challenges …

[HTML][HTML] Unfolding the mystery of alternative splicing through a unique method of in vivo selection

RN Singh - Frontiers in bioscience: a journal and virtual library, 2007 - ncbi.nlm.nih.gov
Alternative splicing of pre-messenger RNA (pre-mRNA) is a fundamental mechanism of
gene regulation in higher eukaryotes. In addition to creating protein diversity, alternative …