The determinants of alternative RNA splicing in human cells

TV Ramanouskaya, VV Grinev - Molecular Genetics and Genomics, 2017 - Springer
Alternative splicing represents an important level of the regulation of gene function in
eukaryotic organisms. It plays a critical role in virtually every biological process within an …

Genomics of alternative splicing: evolution, development and pathophysiology

ER Gamazon, BE Stranger - Human genetics, 2014 - Springer
Alternative splicing is a major cellular mechanism in metazoans for generating proteomic
diversity. A large proportion of protein-coding genes in multicellular organisms undergo …

[PDF][PDF] Genomic analysis of RNA alternative splicing in cancers

Y Xing - Front Biosci, 2007 - article.imrpress.com
[Frontiers in Bioscience 12, 4034-4041, May 1, 2007] 4034 Genomic analysis of RNA
alternative splicing in cancers Yi Xing Depar Page 1 [Frontiers in Bioscience 12, 4034-4041 …

Alternative splicing in cancer: noise, functional, or systematic?

RI Skotheim, M Nees - The international journal of biochemistry & cell …, 2007 - Elsevier
Pre-messenger RNA splicing is a fine-tuned process that generates multiple functional
variants from individual genes. Various cell types and developmental stages regulate …

Selecting Differential Splicing Methods: Practical Considerations

BJ Draper, MJ Dunning, DC James - arXiv preprint arXiv:2409.05458, 2024 - arxiv.org
Alternative splicing is crucial in gene regulation, with significant implications in clinical
settings and biotechnology. This review article compiles bioinformatics RNA-seq tools for …

A general definition and nomenclature for alternative splicing events

M Sammeth, S Foissac, R Guigó - PLoS computational biology, 2008 - journals.plos.org
Understanding the molecular mechanisms responsible for the regulation of the
transcriptome present in eukaryotic cells is one of the most challenging tasks in the …

A network of conserved co-occurring motifs for the regulation of alternative splicing

M Suyama, ED Harrington, S Vinokourova… - Nucleic acids …, 2010 - academic.oup.com
Cis-acting short sequence motifs play important roles in alternative splicing. It is now
possible to identify such sequence motifs as conserved sequence patterns in genome …

Alternative splicing modulates stem cell differentiation

RH Fu, SP Liu, CW Ou, HH Yu, KW Li… - Cell …, 2009 - journals.sagepub.com
Stem cells have the surprising potential to develop into many different cell types. Therefore,
major research efforts have focused on transplantation of stem cells and/or derived …

[HTML][HTML] Integrative analysis of many RNA-seq datasets to study alternative splicing

W Li, C Dai, S Kang, XJ Zhou - Methods, 2014 - Elsevier
Alternative splicing is an important gene regulatory mechanism that dramatically increases
the complexity of the proteome. However, how alternative splicing is regulated and how …

Splicing Express: a software suite for alternative splicing analysis using next-generation sequencing data

JE Kroll, J Kim, L Ohno-Machado, SJ de Souza - PeerJ, 2015 - peerj.com
Motivation. Alternative splicing events (ASEs) are prevalent in the transcriptome of
eukaryotic species and are known to influence many biological phenomena. The …