A comprehensive benchmarking of differential splicing tools for RNA-seq analysis at the event level
M Jiang, S Zhang, H Yin, Z Zhuo… - Briefings in …, 2023 - academic.oup.com
RNA alternative splicing, a post-transcriptional stage in eukaryotes, is crucial in cellular
homeostasis and disease processes. Due to the rapid development of the next-generation …
homeostasis and disease processes. Due to the rapid development of the next-generation …
Bioinformatics of alternative splicing and its regulation
L Florea - Briefings in Bioinformatics, 2006 - academic.oup.com
The sequencing of the human genome and ensuing wave of data generation have brought
new light upon the extent and importance of alternative splicing as an RNA regulatory …
new light upon the extent and importance of alternative splicing as an RNA regulatory …
Tissue-specific splicing factor gene expression signatures
The alternative splicing code that controls and coordinates the transcriptome in complex
multicellular organisms remains poorly understood. It has long been argued that regulation …
multicellular organisms remains poorly understood. It has long been argued that regulation …
Alternative splicing, RNA-seq and drug discovery
S Zhao - Drug discovery today, 2019 - Elsevier
Highlights•RNA-seq is emerging as a powerful technology to study alternative splicing.•RNA
mis-splicing can cause cancers and a variety of other human diseases.•To target alternative …
mis-splicing can cause cancers and a variety of other human diseases.•To target alternative …
Regulation of alternative splicing at the single‐cell level
L Faigenbloom, ND Rubinstein, Y Kloog… - Molecular Systems …, 2015 - embopress.org
Alternative splicing is a key cellular mechanism for generating distinct isoforms, whose
relative abundances regulate critical cellular processes. It is therefore essential that …
relative abundances regulate critical cellular processes. It is therefore essential that …
CASH: a constructing comprehensive splice site method for detecting alternative splicing events
W Wu, J Zong, N Wei, J Cheng, X Zhou… - Briefings in …, 2018 - academic.oup.com
Abstract RNA-sequencing (RNA-seq) can generate millions of reads to provide clues for
analyzing novel or abnormal alternative splicing (AS) events in cells. However, current …
analyzing novel or abnormal alternative splicing (AS) events in cells. However, current …
Piecing together the significance of splicing
R Sorek, M Amitai - nature biotechnology, 2001 - nature.com
Alternative splicing increases protein diversity by allowing multiple, sometimes functionally
distinct, proteins to be encoded by the same gene. It can be specific to tissues, stress …
distinct, proteins to be encoded by the same gene. It can be specific to tissues, stress …
Perfect timing: splicing and transcription rates in living cells
An important step toward understanding gene regulation is the elucidation of the time
necessary for the completion of individual steps. Measurement of reaction rates can reveal …
necessary for the completion of individual steps. Measurement of reaction rates can reveal …
Lessons from non-canonical splicing
Recent improvements in experimental and computational techniques that are used to study
the transcriptome have enabled an unprecedented view of RNA processing, revealing many …
the transcriptome have enabled an unprecedented view of RNA processing, revealing many …
[HTML][HTML] Alternative RNA splicing in stem cells and cancer stem cells: importance of transcript-based expression analysis
Alternative ribonucleic acid (RNA) splicing can lead to the assembly of different protein
isoforms with distinctive functions. The outcome of alternative splicing (AS) can result in a …
isoforms with distinctive functions. The outcome of alternative splicing (AS) can result in a …