[HTML][HTML] A joint NCBI and EMBL-EBI transcript set for clinical genomics and research
J Morales, S Pujar, JE Loveland, A Astashyn, R Bennett… - Nature, 2022 - nature.com
Comprehensive genome annotation is essential to understand the impact of clinically
relevant variants. However, the absence of a standard for clinical reporting and browser …
relevant variants. However, the absence of a standard for clinical reporting and browser …
[HTML][HTML] Choice of transcripts and software has a large effect on variant annotation
Background Variant annotation is a crucial step in the analysis of genome sequencing data.
Functional annotation results can have a strong influence on the ultimate conclusions of …
Functional annotation results can have a strong influence on the ultimate conclusions of …
Ensembl variation resources
SE Hunt, W McLaren, L Gil, A Thormann… - Database, 2018 - academic.oup.com
The major goal of sequencing humans and many other species is to understand the link
between genomic variation, phenotype and disease. There are numerous valuable and well …
between genomic variation, phenotype and disease. There are numerous valuable and well …
[HTML][HTML] A variant by any name: quantifying annotation discordance across tools and clinical databases
Background Clinical genomic testing is dependent on the robust identification and reporting
of variant-level information in relation to disease. With the shift to high-throughput …
of variant-level information in relation to disease. With the shift to high-throughput …
Functional annotation of noncoding sequence variants
Identifying functionally relevant variants against the background of ubiquitous genetic
variation is a major challenge in human genetics. For variants in protein-coding regions, our …
variation is a major challenge in human genetics. For variants in protein-coding regions, our …
[HTML][HTML] A systematic approach to the reporting of medically relevant findings from whole genome sequencing
HM McLaughlin, O Ceyhan-Birsoy, KD Christensen… - BMC Medical …, 2014 - Springer
Abstract Background The MedSeq Project is a randomized clinical trial developing
approaches to assess the impact of integrating genome sequencing into clinical medicine …
approaches to assess the impact of integrating genome sequencing into clinical medicine …
ORegAnno: an open-access community-driven resource for regulatory annotation
OL Griffith, SB Montgomery, B Bernier… - Nucleic acids …, 2007 - academic.oup.com
ORegAnno is an open-source, open-access database and literature curation system for
community-based annotation of experimentally identified DNA regulatory regions …
community-based annotation of experimentally identified DNA regulatory regions …
GENCODE reference annotation for the human and mouse genomes
The accurate identification and description of the genes in the human and mouse genomes
is a fundamental requirement for high quality analysis of data informing both genome …
is a fundamental requirement for high quality analysis of data informing both genome …
Ensembl 2019
F Cunningham, P Achuthan, W Akanni… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Ensembl project (https://www. ensembl. org) makes key genomic data sets
available to the entire scientific community without restrictions. Ensembl seeks to be a …
available to the entire scientific community without restrictions. Ensembl seeks to be a …
Ensembl Genomes 2016: more genomes, more complexity
PJ Kersey, JE Allen, I Armean, S Boddu… - Nucleic acids …, 2016 - academic.oup.com
Abstract Ensembl Genomes (http://www. ensemblgenomes. org) is an integrating resource
for genome-scale data from non-vertebrate species, complementing the resources for …
for genome-scale data from non-vertebrate species, complementing the resources for …