Polyploid QTL‐seq towards rapid development of tightly linked DNA markers for potato and sweetpotato breeding through whole‐genome resequencing

H Yamakawa, E Haque, M Tanaka… - Plant Biotechnology …, 2021 - Wiley Online Library
Potato (Solanum tuberosum L.) and sweetpotato (Ipomoea batatas L.), which are
nutritionally and commercially important tuberous crops, possess a perplexing heredity …

An SNP-based high-density genetic linkage map for tetraploid potato using specific length amplified fragment sequencing (SLAF-Seq) technology

X Yu, M Zhang, Z Yu, D Yang, J Li, G Wu, J Li - Agronomy, 2020 - mdpi.com
Specific length amplified fragment sequencing (SLAF-seq) is a recently developed high-
resolution strategy for the discovery of large-scale de novo genotyping of single nucleotide …

High-density linkage map constructed from a skim sequenced diploid potato population reveals transmission distortion and QTLs for tuber yield and pollen shed

CR Clot, X Wang, J Koopman, AT Navarro, J Bucher… - Potato Research, 2024 - Springer
The reinvention of potato, from a tetraploid clonal crop into a diploid seed-based hybrid crop,
requires insight in the mutational load, recombination landscape, and the genetic basis of …

A k-mer-based bulked segregant analysis approach to map seed traits in unphased heterozygous potato genomes

P Sonsungsan, ML Nganga… - G3: Genes …, 2024 - academic.oup.com
High-throughput sequencing-based methods for bulked segregant analysis (BSA) allow for
the rapid identification of genetic markers associated with traits of interest. BSA studies have …

Validation of genotyping by sequencing using transcriptomics for diversity and application of genomic selection in tetraploid potato

BM Caruana, LW Pembleton, F Constable… - Frontiers in plant …, 2019 - frontiersin.org
Potato is an important food crop due to its increasing consumption, and as a result, there is
demand for varieties with improved production. However, the current status of breeding for …

QTL mapping of potato chip color and tuber traits within an autotetraploid family

K Rak, PC Bethke, JP Palta - Molecular breeding, 2017 - Springer
Cultivated potato (Solanum tuberosum L.) is a highly heterozygous autotetraploid crop
species, and this creates challenges for traditional line development and molecular …

A next-generation sequencing method for genotyping-by-sequencing of highly heterozygous autotetraploid potato

JG Uitdewilligen, AMA Wolters, BB D'hoop, TJA Borm… - PloS one, 2013 - journals.plos.org
Assessment of genomic DNA sequence variation and genotype calling in autotetraploids
implies the ability to distinguish among five possible alternative allele copy number states …

Genetic mapping in autohexaploid sweet potato with low-coverage NGS-based genotyping data

E Yamamoto, K Shirasawa, T Kimura… - G3: Genes …, 2020 - academic.oup.com
Abstract Next-generation sequencing (NGS)-based genotyping methods can generate
numerous genetic markers in a single experiment and have contributed to plant genetic …

The contribution of the Solanaceae coordinated agricultural project to potato breeding

D Douches, CN Hirsch, NC Manrique-Carpintero… - Potato Research, 2014 - Springer
Potato variety development in the USA involves extensive interaction between public sector
scientists and state and national grower organizations to test and commercialize new …

[HTML][HTML] Genome sequencing of adapted diploid potato clones

SR Achakkagari, M Kyriakidou, KM Gardner… - Frontiers in Plant …, 2022 - frontiersin.org
Cultivated potato is a vegetatively propagated crop, and most varieties are autotetraploid
with high levels of heterozygosity. Reducing the ploidy and breeding potato at the diploid …